Variant report

Variant	esv2756325
Chromosome Location	chr13:91836410-91890606
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:62)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:62 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr13:91846115..91848489-chr13:91852535..91854236,2	K562	blood:
2	chr13:91883488..91886150-chr13:92002562..92005490,3	K562	blood:
3	chr13:91846115..91848489-chr13:91852535..91854236,2	K562	blood:
4	chr13:91869159..91872300-chr13:91997996..92002623,4	K562	blood:
5	chr13:91860520..91862440-chr13:92006561..92009210,2	K562	blood:
6	chr13:91870683..91872807-chr13:91874393..91875908,2	K562	blood:
7	chr13:91847389..91849691-chr13:91860574..91863219,2	K562	blood:
8	chr13:91870103..91873591-chr13:91874393..91876437,4	K562	blood:
9	chr13:91843313..91845160-chr13:92006102..92008634,2	K562	blood:
10	chr13:91852863..91854881-chr13:91999038..92000737,2	K562	blood:
11	chr13:91847806..91850062-chr13:91858588..91860776,2	K562	blood:
12	chr13:91786126..91787111-chr13:91837328..91838096,3	MCF-7	breast:
13	chr13:91865105..91867880-chr13:91873303..91875140,2	K562	blood:
14	chr13:91863521..91866442-chr13:91869965..91871707,3	K562	blood:
15	chr13:91855564..91858171-chr13:91859537..91863056,3	K562	blood:
16	chr13:91870683..91872807-chr13:91874393..91875908,2	K562	blood:
17	chr13:91856500..91858979-chr13:91999339..92001257,2	K562	blood:
18	chr13:91865105..91867880-chr13:91873303..91875140,2	K562	blood:
19	chr13:91852326..91855280-chr13:92009520..92011626,2	K562	blood:
20	chr13:91887562..91890351-chr13:91903749..91905859,2	K562	blood:
21	chr13:91851245..91855773-chr13:92007361..92011020,5	K562	blood:
22	chr13:91835233..91837472-chr13:91842589..91844958,2	K562	blood:
23	chr13:91817484..91819097-chr13:91842381..91845203,2	K562	blood:
24	chr13:91814149..91814994-chr13:91837297..91838100,2	MCF-7	breast:
25	chr13:91855564..91858171-chr13:91859537..91863056,3	K562	blood:
26	chr13:91887562..91890351-chr13:91903749..91906128,3	K562	blood:
27	chr13:91862802..91864310-chr13:91866441..91869001,2	K562	blood:
28	chr13:91889138..91891419-chr13:92011620..92013937,2	K562	blood:
29	chr13:91886706..91888504-chr13:92053681..92056261,2	K562	blood:
30	chr13:91876019..91881518-chr13:91996097..92003192,7	K562	blood:
31	chr13:91847806..91850062-chr13:91858588..91860776,2	K562	blood:
32	chr13:91878181..91881388-chr13:92007561..92010597,3	K562	blood:
33	chr13:91862802..91864310-chr13:91866441..91869001,2	K562	blood:
34	chr13:91834823..91837428-chr13:91840778..91842501,2	K562	blood:
35	chr13:91867306..91869481-chr13:92003803..92007635,3	K562	blood:
36	chr13:91863521..91866442-chr13:91869965..91871707,3	K562	blood:
37	chr13:91887387..91891925-chr13:91893469..91896614,5	K562	blood:
38	chr13:91885989..91888652-chr13:91999918..92002715,2	K562	blood:
39	chr13:91887329..91890707-chr13:91908939..91913306,4	K562	blood:
40	chr13:91886377..91888586-chr13:91890931..91893084,2	K562	blood:
41	chr13:91833355..91835314-chr13:91851489..91854213,2	K562	blood:
42	chr13:91883445..91885911-chr13:91887432..91889535,2	K562	blood:
43	chr13:91876908..91879599-chr13:91999659..92001845,3	K562	blood:
44	chr13:91811021..91812916-chr13:91837433..91839416,2	K562	blood:
45	chr13:91847389..91849691-chr13:91860574..91863219,2	K562	blood:
46	chr13:91814207..91815335-chr13:91837268..91838458,5	MCF-7	breast:
47	chr13:91835633..91837291-chr13:91999686..92001869,2	K562	blood:
48	chr13:91841061..91842726-chr13:91999212..92000829,2	K562	blood:
49	chr13:91874317..91877708-chr13:92010260..92012794,3	K562	blood:
50	chr13:91885980..91888438-chr13:92037268..92039780,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCT-6	chr13:91846268-91846334	NONHSAT034661
2	lnc-DCT-6	chr13:91863884-91863952	NONHSAT034661

No data

Variant related genes	Relation type
ENSG00000215417	chromatin interactions

Extended variants
information (count: 2129 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:2129 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs16945476	chr13:91836410-91836411	Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs567849239	chr13:91836414-91836415	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs535261460	chr13:91836480-91836481	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs546875771	chr13:91836492-91836493	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs77604017	chr13:91836499-91836500	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs571768515	chr13:91836513-91836514	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs370450996	chr13:91836515-91836516	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs193280374	chr13:91836518-91836519	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs557003227	chr13:91836526-91836527	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs575259830	chr13:91836541-91836542	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs137990131	chr13:91836582-91836583	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs79330098	chr13:91836610-91836611	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs573048976	chr13:91836617-91836618	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs540471468	chr13:91836629-91836630	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs112586255	chr13:91836646-91836647	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs577077566	chr13:91836667-91836668	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs149542923	chr13:91836682-91836683	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs144097656	chr13:91836696-91836697	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs182509008	chr13:91836704-91836705	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs287532	chr13:91836744-91836745	Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs148308733	chr13:91836761-91836762	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs528784540	chr13:91836778-91836779	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs78678767	chr13:91836779-91836780	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs571766960	chr13:91836786-91836787	Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs201282946	chr13:91836813-91836814	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs538822322	chr13:91836842-91836843	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs188021904	chr13:91836872-91836873	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs192691551	chr13:91836894-91836895	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs183988321	chr13:91836898-91836899	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs554667250	chr13:91836910-91836911	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs79745852	chr13:91836920-91836921	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs398099075	chr13:91836922-91836923	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs76605024	chr13:91836924-91836925	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs533859406	chr13:91836930-91836931	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs192200477	chr13:91836948-91836949	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs375515108	chr13:91836965-91836966	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs577137956	chr13:91836967-91836968	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs115714739	chr13:91836995-91836996	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs560777885	chr13:91836999-91837000	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs556336649	chr13:91837032-91837033	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs574581312	chr13:91837054-91837055	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs113613616	chr13:91837089-91837090	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs569044525	chr13:91837161-91837162	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs74491913	chr13:91837190-91837191	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs540367570	chr13:91837212-91837213	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs540595807	chr13:91837215-91837216	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs147490232	chr13:91837221-91837222	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs532606092	chr13:91837234-91837235	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs61657481	chr13:91837256-91837257	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs139959930	chr13:91837298-91837299	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD
Developmental delay	21147756	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:232 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91836000-91838000	Enhancers	Fetal Kidney	kidney
2	chr13:91836000-91838200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:91836000-91838400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:91836400-91836800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:91836400-91837400	Enhancers	Fetal Muscle Leg	muscle
6	chr13:91836600-91836800	Enhancers	Fetal Intestine Large	intestine
7	chr13:91836600-91837000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:91836600-91837000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:91836600-91837000	Enhancers	Brain Angular Gyrus	brain
10	chr13:91836600-91837000	Enhancers	Brain Substantia Nigra	brain
11	chr13:91836800-91837400	Enhancers	Primary hematopoietic stem cells	blood
12	chr13:91836800-91845000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:91837000-91839200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:91837400-91837800	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr13:91837400-91839800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr13:91838200-91839200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr13:91838400-91839400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr13:91839200-91840200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr13:91839400-91840400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr13:91839800-91840000	Enhancers	Primary hematopoietic stem cells	blood
21	chr13:91840200-91847000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr13:91840400-91841600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr13:91841600-91842000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr13:91842000-91847000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr13:91845000-91846000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr13:91845800-91846000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
27	chr13:91846000-91846400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr13:91846000-91847800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr13:91846400-91846600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr13:91846600-91848400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr13:91847000-91848800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr13:91847000-91848800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr13:91847800-91848800	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr13:91848000-91848800	Enhancers	Primary hematopoietic stem cells	blood
35	chr13:91848400-91848800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr13:91848800-91856000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr13:91852600-91854000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr13:91853000-91853400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr13:91853000-91853800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr13:91853800-91854200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr13:91854000-91855400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr13:91854200-91854400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr13:91854400-91854600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr13:91854400-91855600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr13:91854600-91854800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr13:91854600-91855600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr13:91854800-91855400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr13:91855000-91856400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
49	chr13:91855000-91856400	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr13:91855400-91855600	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links