Variant report

Variant	esv2757071
Chromosome Location	chr4:87417291-87689533
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2439)
CpG islands
(count:1466)
Chromatin interactive
region (count:94)
LncRNA
region (count:1)
Mature miRNA
region (count: 1)
miRNA target
sites (count:0)

(count:2439 , 50 per page) page: 1 2 3 4 5 6 7 ... 49

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr4:87417325-87417521	K562	blood:	n/a	n/a
2	ATF2	chr4:87465369-87466161	GM12878	blood:	n/a	n/a
3	ATF2	chr4:87478593-87479112	GM12878	blood:	n/a	n/a
4	ATF2	chr4:87490265-87491109	GM12878	blood:	n/a	n/a
5	ATF2	chr4:87465369-87465993	GM12878	blood:	n/a	n/a
6	ATF2	chr4:87478684-87479066	GM12878	blood:	n/a	n/a
7	ATF2	chr4:87490269-87491004	GM12878	blood:	n/a	n/a
8	ATF3	chr4:87515061-87515440	A549	lung:	n/a	n/a
9	BACH1	chr4:87515055-87515599	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr4:87492139-87492150	K562	blood:	n/a	n/a
11	BACH1	chr4:87515824-87515971	H1-hESC	embryonic stem cell:	n/a	n/a
12	BATF	chr4:87490638-87490972	GM12878	blood:	n/a	n/a
13	BATF	chr4:87451319-87451687	GM12878	blood:	n/a	n/a
14	BATF	chr4:87566080-87566330	GM12878	blood:	n/a	n/a
15	BATF	chr4:87478757-87479050	GM12878	blood:	n/a	chr4:87478875-87478886
16	BATF	chr4:87465443-87465723	GM12878	blood:	n/a	chr4:87465625-87465634
17	BATF	chr4:87442525-87442768	GM12878	blood:	n/a	n/a
18	BATF	chr4:87490313-87491053	GM12878	blood:	n/a	n/a
19	BATF	chr4:87465431-87465798	GM12878	blood:	n/a	chr4:87465625-87465634
20	BATF	chr4:87591451-87591713	GM12878	blood:	n/a	n/a
21	BATF	chr4:87478747-87479056	GM12878	blood:	n/a	chr4:87478875-87478886
22	BCL11A	chr4:87465487-87465809	GM12878	blood:	n/a	n/a
23	BCL11A	chr4:87490685-87491028	GM12878	blood:	n/a	n/a
24	BCL11A	chr4:87442489-87442737	GM12878	blood:	n/a	n/a
25	BCL11A	chr4:87536626-87536961	GM12878	blood:	n/a	n/a
26	BCL11A	chr4:87515119-87515322	GM12878	blood:	n/a	n/a
27	BCL11A	chr4:87478680-87479028	GM12878	blood:	n/a	chr4:87478874-87478883 chr4:87478969-87478978
28	BCL3	chr4:87579173-87579425	GM12878	blood:	n/a	n/a
29	BCL3	chr4:87515036-87515682	GM12878	blood:	n/a	chr4:87515423-87515432 chr4:87515662-87515671
30	BCL3	chr4:87536670-87537064	GM12878	blood:	n/a	n/a
31	BCL3	chr4:87586206-87586457	GM12878	blood:	n/a	n/a
32	BCL3	chr4:87533699-87533997	GM12878	blood:	n/a	n/a
33	BCL3	chr4:87490312-87491115	GM12878	blood:	n/a	n/a
34	BCLAF1	chr4:87515089-87515656	GM12878	blood:	n/a	chr4:87515423-87515432
35	BCLAF1	chr4:87465387-87465935	GM12878	blood:	n/a	chr4:87465873-87465880
36	BHLHE40	chr4:87473967-87474078	K562	blood:	n/a	n/a
37	BHLHE40	chr4:87632109-87632314	GM12878	blood:	n/a	n/a
38	BHLHE40	chr4:87451407-87451839	GM12878	blood:	n/a	n/a
39	BHLHE40	chr4:87515048-87516419	GM12878	blood:	n/a	n/a
40	BHLHE40	chr4:87419725-87420098	GM12878	blood:	n/a	n/a
41	BHLHE40	chr4:87465476-87466320	GM12878	blood:	n/a	n/a
42	BHLHE40	chr4:87490769-87490771	GM12878	blood:	n/a	n/a
43	BHLHE40	chr4:87543755-87543930	GM12878	blood:	n/a	n/a
44	BHLHE40	chr4:87417281-87417621	GM12878	blood:	n/a	n/a
45	BRCA1	chr4:87514953-87515327	H1-hESC	embryonic stem cell:	n/a	n/a
46	BRCA1	chr4:87443598-87443868	Hela-S3	cervix:	n/a	n/a
47	CEBPB	chr4:87638311-87638443	A549	lung:	n/a	n/a
48	CEBPB	chr4:87634374-87634441	K562	blood:	n/a	n/a
49	CEBPB	chr4:87417889-87418171	A549	lung:	n/a	chr4:87417968-87417981
50	CEBPB	chr4:87618014-87618163	IMR90	lung:	n/a	chr4:87618089-87618102

(count:1466 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:87515467-87515517	U87	brain:	n/a
2	chr4:87514906-87514956	GM12878	blood:	n/a
3	chr4:87515467-87515517	U87	brain:	n/a
4	chr4:87514906-87514956	GM12878	blood:	n/a
5	chr4:87418006-87418056	GM12892	blood:	n/a
6	chr4:87468529-87468579	GM12892	blood:	n/a
7	chr4:87516007-87516057	HUVEC	blood vessel:	n/a
8	chr4:87468529-87468579	H1-hESC	embryonic stem cell:	embryo
9	chr4:87516007-87516057	GM19239	blood:	n/a
10	chr4:87516007-87516057	BJ	skin:	n/a
11	chr4:87468529-87468579	GM12891	blood:	n/a
12	chr4:87469440-87469490	RPTEC	kidney:	n/a
13	chr4:87515184-87515234	IMR90	lung:	fetal
14	chr4:87515419-87515469	LNCaP	prostate:	n/a
15	chr4:87515199-87515249	AG04449	skin:	fetal
16	chr4:87515299-87515349	SK-N-SH_RA	brain:	n/a
17	chr4:87515299-87515349	HCF	heart:	n/a
18	chr4:87515674-87515724	HRPEpiC	eye:	n/a
19	chr4:87468672-87468722	MCF-7	breast:	n/a
20	chr4:87515467-87515517	AG04449	skin:	fetal
21	chr4:87515700-87515750	HAEpiC	amniotic membrane:	n/a
22	chr4:87515700-87515750	BE2_C	brain:	n/a
23	chr4:87515279-87515329	U87	brain:	n/a
24	chr4:87468529-87468579	SK-N-MC	brain:	n/a
25	chr4:87418006-87418056	AG10803	skin:	n/a
26	chr4:87511439-87511489	SK-N-SH	brain:	n/a
27	chr4:87515299-87515349	NB4	blood:	n/a
28	chr4:87515380-87515430	PrEC	prostate:	n/a
29	chr4:87516011-87516061	HCM	heart:	n/a
30	chr4:87515433-87515483	HMEC	breast:	n/a
31	chr4:87515199-87515249	GM19239	blood:	n/a
32	chr4:87515299-87515349	HIPEpiC	eye:	n/a
33	chr4:87516007-87516057	HEEpiC	esophagus:	n/a
34	chr4:87469440-87469490	ProgFib	skin:	n/a
35	chr4:87517859-87517909	AG09319	gingival:	n/a
36	chr4:87515184-87515234	GM12891	blood:	n/a
37	chr4:87469440-87469490	HRCEpiC	kidney:	n/a
38	chr4:87515700-87515750	H1-hESC	embryonic stem cell:	embryo
39	chr4:87511439-87511489	SKMC	muscle:	n/a
40	chr4:87511439-87511489	AG04449	skin:	fetal
41	chr4:87511439-87511489	GM12892	blood:	n/a
42	chr4:87468529-87468579	ECC-1	luminal epithelium:	n/a
43	chr4:87515299-87515349	Hela-S3	cervix:	n/a
44	chr4:87511439-87511489	T-47D	breast:	n/a
45	chr4:87468672-87468722	AG10803	skin:	n/a
46	chr4:87515700-87515750	NH-A	brain:	n/a
47	chr4:87517859-87517909	HCPEpiC	choroid plexus:	n/a
48	chr4:87515380-87515430	NHBE	bronchial:	n/a
49	chr4:87515395-87515445	HCPEpiC	choroid plexus:	n/a
50	chr4:87515395-87515445	A549	lung:	n/a

(count:94 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr4:87519701..87522542-chr4:87523831..87525544,2	MCF-7	breast:
2	chr4:87522636..87524731-chr4:87524767..87527790,3	K562	blood:
3	chr4:87514124..87517809-chr4:87811943..87814768,5	MCF-7	breast:
4	chr4:87591850..87593506-chr4:87595973..87598861,2	MCF-7	breast:
5	chr4:87417400..87418080-chr4:87443444..87444104,2	MCF-7	breast:
6	chr4:87530490..87533389-chr4:87533491..87536660,3	MCF-7	breast:
7	chr4:87493805..87495855-chr4:87500562..87503508,2	MCF-7	breast:
8	chr4:87534871..87536613-chr4:87547091..87549143,2	K562	blood:
9	chr4:87598063..87600452-chr4:87602693..87604467,2	MCF-7	breast:
10	chr4:87419780..87420413-chr4:87816850..87817482,2	K562	blood:
11	chr4:87592344..87595158-chr4:87604628..87606755,2	K562	blood:
12	chr4:87668227..87671028-chr4:87672154..87674111,3	MCF-7	breast:
13	chr4:87442481..87446452-chr4:87514305..87517111,5	MCF-7	breast:
14	chr4:87513620..87519829-chr4:87520022..87526083,14	MCF-7	breast:
15	chr4:87515788..87518508-chr4:87520031..87521572,2	K562	blood:
16	chr4:87464603..87467042-chr4:87514125..87517008,2	MCF-7	breast:
17	chr4:87514091..87516787-chr4:87546977..87549306,2	MCF-7	breast:
18	chr4:87507143..87508934-chr4:87512831..87514813,2	MCF-7	breast:
19	chr4:87495934..87497626-chr4:87503744..87506364,2	K562	blood:
20	chr4:87595555..87598937-chr4:87600350..87602837,3	K562	blood:
21	chr4:87491871..87493629-chr4:87496523..87499181,2	K562	blood:
22	chr4:87416425..87419552-chr4:87420696..87423306,3	K562	blood:
23	chr4:87483039..87485486-chr4:87514855..87517675,2	MCF-7	breast:
24	chr4:87534871..87536613-chr4:87547091..87549143,2	K562	blood:
25	chr4:87514311..87516955-chr4:87516961..87519676,2	MCF-7	breast:
26	chr4:87530294..87531963-chr4:87533296..87535743,2	K562	blood:
27	chr4:87617245..87619402-chr4:87619927..87623760,3	K562	blood:
28	chr4:87617245..87619402-chr4:87619927..87623760,3	K562	blood:
29	chr4:87416961..87417707-chr4:87816598..87817123,2	MCF-7	breast:
30	chr4:87519701..87522542-chr4:87523831..87525544,2	MCF-7	breast:
31	chr4:87443253..87444235-chr4:87816583..87817731,4	MCF-7	breast:
32	chr4:87592727..87594779-chr4:87641743..87643865,2	MCF-7	breast:
33	chr4:87421702..87423258-chr4:87812889..87815471,2	MCF-7	breast:
34	chr4:87442312..87445005-chr4:87478694..87481365,2	MCF-7	breast:
35	chr4:87417400..87418080-chr4:87443444..87444104,2	MCF-7	breast:
36	chr4:87419852..87420552-chr4:87816647..87817499,2	MCF-7	breast:
37	chr4:87507716..87510350-chr4:87515376..87516928,2	MCF-7	breast:
38	chr4:87598063..87600452-chr4:87602693..87604467,2	MCF-7	breast:
39	chr4:87493805..87495855-chr4:87500562..87503508,2	MCF-7	breast:
40	chr17:56756591..56757518-chr4:87515320..87516003,2	Hela-S3	cervix:
41	chr4:87507433..87508945-chr4:87512741..87515141,2	MCF-7	breast:
42	chr4:87481451..87483202-chr4:87532633..87534262,2	MCF-7	breast:
43	chr4:87530294..87531963-chr4:87533296..87535743,2	K562	blood:
44	chr4:87516507..87518409-chr4:87595594..87597208,2	MCF-7	breast:
45	chr4:87626677..87627413-chr9:20510998..20511530,2	MCF-7	breast:
46	chr4:87591850..87593506-chr4:87595973..87598861,2	MCF-7	breast:
47	chr4:87522636..87524731-chr4:87524767..87527790,3	K562	blood:
48	chr4:87635752..87637594-chr4:87790977..87792826,2	K562	blood:
49	chr4:87425423..87428223-chr4:87514658..87517534,2	MCF-7	breast:
50	chr4:87485932..87486733-chr4:87816558..87817197,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC10A6-4	chr4:87514886-87515272	NONHSAT097281

miRNA name	Chromosome Location	mirBase accession
hsa-miR-4452	chr4:87463638-87463660	MIMAT0018974

No data

Variant related genes	Relation type
MIR4452	TF binding region
PTPN13	TF binding region
MAPK10	TF binding region
MIR4452	CpG island
PTPN13	CpG island
MAPK10	CpG island
ENSG00000163629	chromatin interactions
ENSG00000163633	chromatin interactions
ENSG00000109339	chromatin interactions
ENSG00000200997	chromatin interactions
ENSG00000243312	chromatin interactions

Extended variants
information (count: 8972 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:8972 , 50 per page) page: 1 2 3 4 5 6 7 ... 180

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6838659	chr4:87417291-87417292	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs564300047	chr4:87417326-87417327	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs528311588	chr4:87417398-87417399	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs546897072	chr4:87417452-87417453	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs143835284	chr4:87417477-87417478	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs151294320	chr4:87417538-87417539	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs186313662	chr4:87417565-87417566	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs72665714	chr4:87417612-87417613	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs372252484	chr4:87417626-87417627	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs369004671	chr4:87417748-87417749	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs537551277	chr4:87417801-87417802	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs191257184	chr4:87417829-87417830	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs140645317	chr4:87417927-87417928	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs552357103	chr4:87417947-87417948	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs534935024	chr4:87417949-87417950	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs528482511	chr4:87417955-87417956	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs201206781	chr4:87417978-87417979	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs150485716	chr4:87418007-87418008	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs562636660	chr4:87418022-87418023	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs568427981	chr4:87418030-87418031	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs535040602	chr4:87418039-87418040	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs182212986	chr4:87418047-87418048	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs575196155	chr4:87418052-87418053	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs545869662	chr4:87418060-87418061	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs557598360	chr4:87418116-87418117	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs186560424	chr4:87418189-87418190	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs75656076	chr4:87418195-87418196	Weak transcription Enhancers Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs547954515	chr4:87418305-87418306	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs190941278	chr4:87418372-87418373	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs138302084	chr4:87418395-87418396	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs6828022	chr4:87418444-87418445	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs563691898	chr4:87418454-87418455	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs183174574	chr4:87418493-87418494	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs552617797	chr4:87418506-87418507	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs570878373	chr4:87418627-87418628	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs188764989	chr4:87418703-87418704	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs373853628	chr4:87418734-87418735	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs546796734	chr4:87418742-87418743	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs568194166	chr4:87418750-87418751	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs568364870	chr4:87418763-87418764	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs535741292	chr4:87418891-87418892	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs527404246	chr4:87418930-87418931	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs192892417	chr4:87419037-87419038	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs55722156	chr4:87419057-87419058	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs539086028	chr4:87419244-87419245	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs557803005	chr4:87419250-87419251	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs572864038	chr4:87419251-87419252	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs540383833	chr4:87419265-87419266	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs185054825	chr4:87419336-87419337	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs141981664	chr4:87419351-87419352	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Parkinson disease	21956041	CNVD
Mental retardation	20522426	CNVD
delayed speech	20522426	CNVD
growth disorder	20522426	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Parkinson disease	18923514	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelodysplastic syndrome	21251322	CNVD
Multiple myeloma	17550852	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	18414403	CNVD
primary effusion lymphomas	17116491	CNVD
Olfactory neuroblastoma	18408657	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
Cancer	20164919	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Breast cancer	22522925	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:3445 , 50 per page) page: 1 2 3 4 5 6 7 ... 69

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87405000-87418400	Weak transcription	Fetal Kidney	kidney
2	chr4:87407600-87422600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:87409400-87418400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:87411800-87417600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:87412600-87418400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:87414800-87417600	Weak transcription	Osteobl	bone
7	chr4:87415000-87418600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:87415000-87427000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:87415200-87417600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:87415200-87418200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:87415600-87417600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:87415600-87417800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:87415600-87418400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:87415600-87418800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:87415600-87418800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:87415600-87419000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr4:87416800-87417800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:87416800-87420400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:87417000-87417400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr4:87417000-87418400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr4:87417000-87420200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:87417000-87421600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:87417200-87417400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr4:87417200-87417400	Enhancers	Brain Angular Gyrus	brain
25	chr4:87417200-87417400	Enhancers	Brain Anterior Caudate	brain
26	chr4:87417200-87417400	Enhancers	Brain Cingulate Gyrus	brain
27	chr4:87417200-87417400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr4:87417200-87417400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:87417200-87418600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr4:87417200-87418800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr4:87417200-87419600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:87417200-87419800	Enhancers	Brain Hippocampus Middle	brain
33	chr4:87417200-87419800	Enhancers	Brain Substantia Nigra	brain
34	chr4:87417200-87420200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:87417200-87420200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:87417200-87420400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr4:87417200-87420600	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr4:87417200-87420600	Enhancers	NHEK	skin
39	chr4:87417400-87418200	Enhancers	Placenta Amnion	Placenta Amnion
40	chr4:87417400-87418400	Weak transcription	Brain Angular Gyrus	brain
41	chr4:87417400-87418400	Weak transcription	Brain Anterior Caudate	brain
42	chr4:87417400-87418400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr4:87417400-87418400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr4:87417400-87418400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr4:87417400-87419000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr4:87417400-87419800	Enhancers	HMEC	breast
47	chr4:87417600-87417800	Enhancers	Osteobl	bone
48	chr4:87417600-87418200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:87417600-87418200	Enhancers	Hela-S3	cervix
50	chr4:87417600-87419600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links