Variant report
| Variant | esv2757378 |
|---|---|
| Chromosome Location | chr10:37931812-37958912 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ZNF33A-7 | chr10:37950622-37950736 | l_290_chr10:37950621-37961840_testes |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs137893796 | chr10:37939240-37939241 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs569748794 | chr10:37939242-37939243 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs193119746 | chr10:37939262-37939263 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs114601605 | chr10:37939281-37939282 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs573034353 | chr10:37939288-37939289 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs542142487 | chr10:37939303-37939304 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs141929163 | chr10:37939319-37939320 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs544678583 | chr10:37939320-37939321 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs534766560 | chr10:37939362-37939363 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs116140402 | chr10:37939369-37939370 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs11011307 | chr10:37939378-37939379 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs537772573 | chr10:37939401-37939402 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs557675070 | chr10:37939411-37939412 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs577579528 | chr10:37939417-37939418 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs545837690 | chr10:37939430-37939431 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs552649406 | chr10:37939483-37939484 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs77867670 | chr10:37939521-37939522 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs150277241 | chr10:37939526-37939527 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs541556579 | chr10:37939535-37939536 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs561946998 | chr10:37939552-37939553 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs138920495 | chr10:37939579-37939580 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs188410524 | chr10:37939580-37939581 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs72789860 | chr10:37939641-37939642 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 24 | rs11011308 | chr10:37939706-37939707 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 25 | rs552549282 | chr10:37939714-37939715 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs551685868 | chr10:37939725-37939726 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs528635403 | chr10:37939765-37939766 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs543129450 | chr10:37950676-37950677 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 29 | rs563532882 | chr10:37950685-37950686 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 30 | rs72468144 | chr10:37950716-37950717 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 31 | rs72468145 | chr10:37950723-37950724 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:40)
| Disease | PMID | Source |
|---|---|---|
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Behavioral abnormalities | 21522184 | CNVD |
| Dysmorphic features | 21522184 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Bethlem myopathy | 20302629 | CNVD |
| Non-muscle invasive bladder neoplasm | 19445696 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Hepatocellular carcinoma | 16785998 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Barrett''s adenocarcinoma | 18663352 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Lung cancer | 21569311 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:37939200-37939800 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
