Variant report

Variant	esv2757533
Chromosome Location	chr13:54692032-54711236
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:122)
Chromatin interactive
region (count:2)
LncRNA
region (count:38)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr13:54694433-54694482	GM13977	blood:	n/a	n/a
2	CTCF	chr13:54705388-54705427	Kidney_OC	kidney:	n/a	n/a
3	FOS	chr13:54698895-54699177	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr13:54707452-54707570	MCF10A-Er-Src	breast:	n/a	chr13:54707481-54707490 chr13:54707481-54707489 chr13:54707480-54707489 chr13:54707481-54707488
5	FOXA1	chr13:54702368-54702516	T-47D	breast:	n/a	chr13:54702435-54702450
6	FOXA2	chr13:54702308-54702615	A549	lung:	n/a	n/a
7	FOXA2	chr13:54702311-54702666	A549	lung:	n/a	n/a
8	GATA2	chr13:54708324-54708628	SH-SY5Y	brain:	n/a	chr13:54708445-54708452 chr13:54708438-54708459 chr13:54708445-54708452 chr13:54708445-54708452 chr13:54708444-54708454 chr13:54708441-54708457
9	GATA3	chr13:54708001-54708383	SH-SY5Y	brain:	n/a	n/a
10	GTF2F1	chr13:54701046-54701049	H1-hESC	embryonic stem cell:	n/a	n/a
11	JUND	chr13:54698975-54699161	HepG2	liver:	n/a	n/a
12	JUND	chr13:54707386-54707592	HepG2	liver:	n/a	chr13:54707481-54707490 chr13:54707479-54707490 chr13:54707481-54707489 chr13:54707480-54707489 chr13:54707481-54707488
13	MAFF	chr13:54710203-54710394	HepG2	liver:	n/a	chr13:54710279-54710297
14	MAFF	chr13:54694725-54694925	HepG2	liver:	n/a	chr13:54694834-54694848 chr13:54694835-54694853
15	MAFK	chr13:54694793-54694856	IMR90	lung:	n/a	chr13:54694834-54694848 chr13:54694833-54694849 chr13:54694836-54694851 chr13:54694831-54694851
16	MAFK	chr13:54710196-54710416	HepG2	liver:	n/a	chr13:54710282-54710293 chr13:54710281-54710292 chr13:54710281-54710296 chr13:54710281-54710297 chr13:54710280-54710294 chr13:54710281-54710292 chr13:54710282-54710293
17	MAFK	chr13:54710128-54710433	HepG2	liver:	n/a	chr13:54710282-54710293 chr13:54710281-54710292 chr13:54710281-54710296 chr13:54710281-54710297 chr13:54710280-54710294 chr13:54710281-54710292 chr13:54710282-54710293
18	MAFK	chr13:54694696-54694959	HepG2	liver:	n/a	chr13:54694834-54694848 chr13:54694833-54694849 chr13:54694836-54694851 chr13:54694831-54694851
19	MAFK	chr13:54694741-54694941	HepG2	liver:	n/a	chr13:54694834-54694848 chr13:54694833-54694849 chr13:54694836-54694851 chr13:54694831-54694851
20	MAX	chr13:54697829-54697939	NB4	blood:	n/a	n/a
21	POLR2A	chr13:54700558-54700598	H1-hESC	embryonic stem cell:	n/a	n/a
22	POLR2A	chr13:54704934-54705297	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr13:54704901-54705188	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr13:54700770-54700801	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr13:54704931-54705179	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr13:54704610-54704776	H1-hESC	embryonic stem cell:	n/a	n/a
27	POLR2A	chr13:54699812-54699898	H1-hESC	embryonic stem cell:	n/a	n/a
28	POLR2A	chr13:54698566-54698703	MCF10A-Er-Src	breast:	n/a	n/a
29	POLR2A	chr13:54695474-54695662	GM12878	blood:	n/a	n/a
30	POLR2A	chr13:54704934-54705304	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr13:54700523-54700539	H1-hESC	embryonic stem cell:	n/a	n/a
32	POLR2A	chr13:54697012-54698024	H1-hESC	embryonic stem cell:	n/a	n/a
33	RUNX3	chr13:54698833-54699134	GM12878	blood:	n/a	n/a
34	SRF	chr13:54705059-54705171	GM12878	blood:	n/a	n/a
35	STAT3	chr13:54700238-54700438	MCF10A-Er-Src	breast:	n/a	n/a
36	TEAD4	chr13:54707078-54707300	H1-hESC	embryonic stem cell:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:54708344-54708394	HRCEpiC	kidney:	n/a
2	chr13:54707971-54708021	Hela-S3	cervix:	n/a
3	chr13:54708344-54708394	HEK293	kidney:	embryo
4	chr13:54707971-54708021	GM12878	blood:	n/a
5	chr13:54708344-54708394	A549	lung:	n/a
6	chr13:54708344-54708394	HRE	kidney:	n/a
7	chr13:54707971-54708021	AG04449	skin:	fetal
8	chr13:54708344-54708394	NHBE	bronchial:	n/a
9	chr13:54708344-54708394	BE2_C	brain:	n/a
10	chr13:54707971-54708021	SK-N-SH_RA	brain:	n/a
11	chr13:54708344-54708394	HCF	heart:	n/a
12	chr13:54708344-54708394	HUVEC	blood vessel:	n/a
13	chr13:54708344-54708394	AoSMC	blood vessel:	n/a
14	chr13:54707971-54708021	NHBE	bronchial:	n/a
15	chr13:54708344-54708394	HEEpiC	esophagus:	n/a
16	chr13:54708344-54708394	HCM	heart:	n/a
17	chr13:54708344-54708394	K562	blood:	n/a
18	chr13:54708344-54708394	LNCaP	prostate:	n/a
19	chr13:54708344-54708394	SK-N-SH_RA	brain:	n/a
20	chr13:54707971-54708021	HCT-116	colon:	n/a
21	chr13:54708344-54708394	GM12892	blood:	n/a
22	chr13:54707971-54708021	HRCEpiC	kidney:	n/a
23	chr13:54707971-54708021	GM19239	blood:	n/a
24	chr13:54708344-54708394	MCF10A-Er-Src	breast:	n/a
25	chr13:54708344-54708394	HMEC	breast:	n/a
26	chr13:54708344-54708394	RPTEC	kidney:	n/a
27	chr13:54708344-54708394	GM12878	blood:	n/a
28	chr13:54708344-54708394	AG04450	lung:	fetal
29	chr13:54708344-54708394	HRPEpiC	eye:	n/a
30	chr13:54707971-54708021	ProgFib	skin:	n/a
31	chr13:54707971-54708021	MCF10A-Er-Src	breast:	n/a
32	chr13:54708344-54708394	Caco-2	colon:	n/a
33	chr13:54707971-54708021	LNCaP	prostate:	n/a
34	chr13:54708344-54708394	U87	brain:	n/a
35	chr13:54707971-54708021	GM12892	blood:	n/a
36	chr13:54707971-54708021	MCF-7	breast:	n/a
37	chr13:54707971-54708021	SAEC	small airway:	n/a
38	chr13:54708344-54708394	ProgFib	skin:	n/a
39	chr13:54707971-54708021	HMEC	breast:	n/a
40	chr13:54708344-54708394	SK-N-SH	brain:	n/a
41	chr13:54708344-54708394	PrEC	prostate:	n/a
42	chr13:54708344-54708394	NT2-D1	testis:	n/a
43	chr13:54707971-54708021	CMK	blood:	n/a
44	chr13:54708344-54708394	T-47D	breast:	n/a
45	chr13:54707971-54708021	A549	lung:	n/a
46	chr13:54707971-54708021	GM06990	blood:	n/a
47	chr13:54707971-54708021	IMR90	lung:	fetal
48	chr13:54707971-54708021	HPAEpiC	pulmonary alveolar:	n/a
49	chr13:54708344-54708394	AG04449	skin:	fetal
50	chr13:54708344-54708394	CMK	blood:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:54693602..54695448-chr13:54696284..54698888,2	MCF-7	breast:
2	chr13:54693602..54695448-chr13:54696284..54698888,2	MCF-7	breast:

(count:38 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PCDH8-5	chr13:54706748-54707001	ENSG00000234787.3
2	lnc-PCDH8-5	chr13:54706748-54707001	ENSG00000234787
3	lnc-PCDH8-5	chr13:54698459-54698890	ENSG00000234787.3
4	lnc-PCDH8-5	chr13:54706748-54707001	ENSG00000234787
5	lnc-PCDH8-5	chr13:54706748-54706954	ENSG00000234787.3
6	lnc-PCDH8-5	chr13:54699130-54699407	ENSG00000234787.3
7	lnc-PCDH8-5	chr13:54706748-54707006	NR_108062
8	lnc-PCDH8-5	chr13:54700998-54701564	NR_108063
9	lnc-PCDH8-5	chr13:54695075-54695179	ENSG00000234787.3
10	lnc-PCDH8-5	chr13:54701415-54701564	NONHSAT034028
11	lnc-PCDH8-5	chr13:54706748-54706986	ENSG00000234787.3
12	lnc-PCDH8-5	chr13:54698462-54698890	NONHSAT034028
13	lnc-PCDH8-5	chr13:54701415-54701564	ENSG00000234787.3
14	lnc-PCDH8-5	chr13:54698948-54699407	ENSG00000234787.3
15	lnc-PCDH8-5	chr13:54701415-54701564	ENSG00000234787
16	lnc-PCDH8-5	chr13:54705009-54705206	ENSG00000234787.3
17	lnc-PCDH8-5	chr13:54701415-54701564	ENSG00000234787.3
18	lnc-PCDH8-5	chr13:54698459-54698890	ENSG00000234787
19	lnc-PCDH8-5	chr13:54701415-54701564	ENSG00000234787.3
20	lnc-PCDH8-5	chr13:54701415-54701564	ENSG00000234787
21	lnc-PCDH8-5	chr13:54701415-54701564	ENSG00000234787.3
22	lnc-PCDH8-5	chr13:54706497-54706748	ENSG00000234787
23	lnc-PCDH8-5	chr13:54705009-54705206	NR_108062
24	lnc-PCDH8-5	chr13:54701415-54701564	NR_108062
25	lnc-PCDH8-5	chr13:54705009-54705206	NONHSAT034028
26	lnc-PCDH8-5	chr13:54705009-54705206	ENSG00000234787
27	lnc-PCDH8-5	chr13:54700997-54701564	ENSG00000234787
28	lnc-PCDH8-5	chr13:54699284-54699407	ENSG00000234787.3
29	lnc-PCDH8-5	chr13:54695071-54695179	ENSG00000234787
30	lnc-PCDH8-5	chr13:54701415-54701478	ENSG00000234787.3
31	lnc-PCDH8-5	chr13:54699284-54699407	ENSG00000234787
32	lnc-PCDH8-5	chr13:54706748-54706997	ENSG00000234787.3
33	lnc-PCDH8-5	chr13:54706748-54707001	NONHSAT034028
34	lnc-PCDH8-5	chr13:54705009-54705206	ENSG00000234787.3
35	lnc-PCDH8-5	chr13:54706748-54707006	NR_108063
36	lnc-PCDH8-5	chr13:54698459-54698890	NR_108062
37	lnc-PCDH8-5	chr13:54705009-54705206	NR_108063
38	lnc-PCDH8-5	chr13:54705009-54705206	ENSG00000234787

No data

Variant related genes	Relation type
LINC00458	TF binding region
LINC00458	CpG island
POU5F1	lncRNA

Extended variants
information (count: 859 )
Associated
traits (count: 109 )

Variant overlapped rSNPs/rCNVs (count:859 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2260462	chr13:54692032-54692033	Weak transcription Genic enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs556099173	chr13:54692079-54692080	Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs531938880	chr13:54692122-54692123	Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs551873521	chr13:54692173-54692174	Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs560039467	chr13:54692192-54692193	Weak transcription Genic enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs576132994	chr13:54692250-54692251	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs528757901	chr13:54692277-54692278	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs186395950	chr13:54692330-54692331	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs535248027	chr13:54692333-54692334	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs568634186	chr13:54692337-54692338	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs17089288	chr13:54692342-54692343	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs551048220	chr13:54692376-54692377	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs2408993	chr13:54692377-54692378	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs189342500	chr13:54692410-54692411	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs576557769	chr13:54692463-54692464	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs558927015	chr13:54692516-54692517	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs553090791	chr13:54692517-54692518	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs565994998	chr13:54692574-54692575	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs139029760	chr13:54692594-54692595	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs554767010	chr13:54692602-54692603	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs542260322	chr13:54692659-54692660	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs79641890	chr13:54692713-54692714	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs556677999	chr13:54692841-54692842	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs1984141	chr13:54692859-54692860	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs541389079	chr13:54692860-54692861	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs561647514	chr13:54692888-54692889	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs1335979	chr13:54692892-54692893	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs543449094	chr13:54692935-54692936	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs528797528	chr13:54692963-54692964	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs375413009	chr13:54692964-54692965	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs562268748	chr13:54692974-54692975	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs1984140	chr13:54693040-54693041	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs373032079	chr13:54693053-54693054	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs142232573	chr13:54693091-54693092	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs117947362	chr13:54693093-54693094	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs533248564	chr13:54693124-54693125	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs547009510	chr13:54693152-54693153	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs566720477	chr13:54693270-54693271	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs180958128	chr13:54693296-54693297	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs185913499	chr13:54693299-54693300	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs568003031	chr13:54693305-54693306	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs2784558	chr13:54693324-54693325	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs556713131	chr13:54693329-54693330	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs562033761	chr13:54693373-54693374	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs527665152	chr13:54693383-54693384	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs375027693	chr13:54693390-54693391	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs545545289	chr13:54693436-54693437	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs8001182	chr13:54693457-54693458	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs572701708	chr13:54693477-54693478	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs145867092	chr13:54693482-54693483	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:109)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	16774939	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	19242612	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	17245344	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	17053054	CNVD
Multiple myeloma	19135901	CNVD
Autism	18414403	CNVD
Neurocytoma	17123091	CNVD
Central neurocytomas	17123091	CNVD
Prostate cancer	16461572	CNVD
Merkel cell carcinoma	19020549	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
lymphocytic leukemia	21291569	CNVD
Multiple myeloma	17550852	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21858162	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute myeloid leukemia	17237825	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Glioblastoma multiforme	21922591	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Gastric cancer	17908304	CNVD
Breast cancer	18852474	CNVD
Myelofibrosis	22110671	CNVD
craniofacial dysmorphism	21918468	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Breast cancer	17393978	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Urothelial carcinoma	21177765	CNVD

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54683200-54698800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:54688600-54692200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:54688600-54699000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr13:54689000-54706000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:54689400-54700000	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:54691800-54706000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr13:54692000-54692200	Genic enhancers	H9 Cell Line	embryonic stem cell
8	chr13:54692000-54695400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:54692200-54693800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
10	chr13:54692200-54695800	Strong transcription	H9 Cell Line	embryonic stem cell
11	chr13:54692600-54705000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr13:54693800-54700000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr13:54695400-54697200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr13:54695800-54697600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr13:54696200-54700400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr13:54696400-54699200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr13:54697200-54700600	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr13:54697600-54702600	Strong transcription	H9 Cell Line	embryonic stem cell
19	chr13:54698800-54700800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr13:54698800-54701000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr13:54699000-54701600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr13:54699200-54701400	Strong transcription	H1 Cell Line	embryonic stem cell
23	chr13:54700000-54700200	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr13:54700000-54702800	Genic enhancers	HUES6 Cell Line	embryonic stem cell
25	chr13:54700200-54701200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
26	chr13:54700400-54700800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr13:54700600-54701000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr13:54700600-54701200	Genic enhancers	HUES64 Cell Line	embryonic stem cell
29	chr13:54700800-54701000	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr13:54700800-54701200	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr13:54700800-54701400	Genic enhancers	HUES48 Cell Line	embryonic stem cell
32	chr13:54701000-54701600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr13:54701000-54704400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr13:54701000-54705200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr13:54701200-54701600	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr13:54701200-54703400	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr13:54701200-54704400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr13:54701400-54704200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr13:54701400-54704600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr13:54701600-54702000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr13:54701600-54702400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr13:54701600-54702600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
43	chr13:54702000-54702200	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr13:54702200-54704400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr13:54702400-54703600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr13:54702600-54703200	Genic enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr13:54702600-54704200	Active TSS	H9 Cell Line	embryonic stem cell
48	chr13:54702800-54706600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
49	chr13:54703200-54704600	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
50	chr13:54703400-54703600	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links