Variant report

Variant	esv2757694
Chromosome Location	chr19:35653642-35673333
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:454)
CpG islands
(count:61)
Chromatin interactive
region (count:41)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:454 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:35656169-35656758	K562	blood:	n/a	n/a
2	ARID3A	chr19:35655359-35655783	K562	blood:	n/a	n/a
3	ARID3A	chr19:35657205-35658175	K562	blood:	n/a	n/a
4	ATF1	chr19:35656164-35656348	K562	blood:	n/a	n/a
5	ATF1	chr19:35668666-35668751	K562	blood:	n/a	n/a
6	ATF1	chr19:35657375-35657995	K562	blood:	n/a	n/a
7	BACH1	chr19:35657375-35658059	K562	blood:	n/a	n/a
8	BACH1	chr19:35672325-35672659	K562	blood:	n/a	n/a
9	BACH1	chr19:35672401-35672575	H1-hESC	embryonic stem cell:	n/a	n/a
10	BHLHE40	chr19:35657446-35658280	K562	blood:	n/a	n/a
11	BHLHE40	chr19:35666721-35667062	K562	blood:	n/a	n/a
12	BHLHE40	chr19:35656322-35656848	K562	blood:	n/a	n/a
13	BRCA1	chr19:35659214-35659636	Hela-S3	cervix:	n/a	n/a
14	CBX3	chr19:35657297-35657944	K562	blood:	n/a	n/a
15	CBX3	chr19:35656160-35656910	K562	blood:	n/a	n/a
16	CBX3	chr19:35668267-35668636	K562	blood:	n/a	n/a
17	CBX3	chr19:35653272-35654371	HCT-116	colon:	n/a	n/a
18	CBX3	chr19:35653333-35654362	HCT-116	colon:	n/a	n/a
19	CBX3	chr19:35668770-35669121	K562	blood:	n/a	n/a
20	CBX3	chr19:35668241-35669117	K562	blood:	n/a	n/a
21	CBX3	chr19:35663404-35663871	K562	blood:	n/a	n/a
22	CCNT2	chr19:35657410-35657810	K562	blood:	n/a	n/a
23	CEBPB	chr19:35665118-35665360	K562	blood:	n/a	n/a
24	CEBPB	chr19:35661673-35661894	HepG2	liver:	n/a	chr19:35661811-35661822
25	CEBPB	chr19:35666718-35667036	IMR90	lung:	n/a	n/a
26	CEBPB	chr19:35665185-35665200	A549	lung:	n/a	n/a
27	CEBPB	chr19:35659136-35659504	Hela-S3	cervix:	n/a	n/a
28	CEBPB	chr19:35661718-35661935	K562	blood:	n/a	chr19:35661811-35661822
29	CEBPD	chr19:35657397-35657944	K562	blood:	n/a	n/a
30	CEBPD	chr19:35657387-35658522	K562	blood:	n/a	n/a
31	CHD2	chr19:35657229-35657895	K562	blood:	n/a	n/a
32	CHD2	chr19:35656889-35656896	K562	blood:	n/a	n/a
33	CTCF	chr19:35653800-35653950	HepG2	liver:	n/a	n/a
34	CTCF	chr19:35657450-35657766	K562	blood:	n/a	n/a
35	CTCF	chr19:35659380-35659530	HAc	cerebellar:	n/a	n/a
36	CTCF	chr19:35659300-35659450	AG04449	skin:	n/a	n/a
37	CTCF	chr19:35659320-35659470	AG09309	skin:	n/a	n/a
38	CTCF	chr19:35659340-35659490	HCPEpiC	choroid plexus:	n/a	n/a
39	CTCF	chr19:35659300-35659450	AG10803	skin:	n/a	n/a
40	CTCF	chr19:35657680-35657830	GM12864	blood:	n/a	n/a
41	CTCF	chr19:35659240-35659390	BJ	skin:	n/a	n/a
42	CTCF	chr19:35659604-35659661	Hela-S3	cervix:	n/a	n/a
43	CTCF	chr19:35659342-35659427	Fibrobl	skin:	n/a	n/a
44	CTCF	chr19:35659360-35659510	SAEC	small airway:	n/a	n/a
45	CTCF	chr19:35659280-35659430	A549	lung:	n/a	n/a
46	CTCF	chr19:35659280-35659430	SAEC	small airway:	n/a	n/a
47	CTCF	chr19:35658700-35658850	HEEpiC	esophagus:	n/a	n/a
48	CTCF	chr19:35659320-35659470	HCFaa	heart:	n/a	n/a
49	CTCF	chr19:35659320-35659470	HMEC	breast:	n/a	n/a
50	CTCF	chr19:35659320-35659470	HMF	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:35660584-35660634	HCPEpiC	choroid plexus:	n/a
2	chr19:35660584-35660634	RPTEC	kidney:	n/a
3	chr19:35660584-35660634	AG09319	gingival:	n/a
4	chr19:35660584-35660634	K562	blood:	n/a
5	chr19:35660584-35660634	SK-N-SH_RA	brain:	n/a
6	chr19:35660584-35660634	ProgFib	skin:	n/a
7	chr19:35660584-35660634	HEEpiC	esophagus:	n/a
8	chr19:35660584-35660634	HRCEpiC	kidney:	n/a
9	chr19:35660584-35660634	ECC-1	luminal epithelium:	n/a
10	chr19:35660584-35660634	Hela-S3	cervix:	n/a
11	chr19:35660584-35660634	PFSK-1	brain:	n/a
12	chr19:35660584-35660634	HCF	heart:	n/a
13	chr19:35660584-35660634	GM06990	blood:	n/a
14	chr19:35660584-35660634	SKMC	muscle:	n/a
15	chr19:35660584-35660634	HIPEpiC	eye:	n/a
16	chr19:35660584-35660634	Hepatocyte	liver:	n/a
17	chr19:35660584-35660634	HMEC	breast:	n/a
18	chr19:35660584-35660634	NHBE	bronchial:	n/a
19	chr19:35660584-35660634	U87	brain:	n/a
20	chr19:35660584-35660634	HEK293	kidney:	embryo
21	chr19:35660584-35660634	Caco-2	colon:	n/a
22	chr19:35660584-35660634	NT2-D1	testis:	n/a
23	chr19:35660584-35660634	NB4	blood:	n/a
24	chr19:35660584-35660634	HAEpiC	amniotic membrane:	n/a
25	chr19:35660584-35660634	AG04450	lung:	fetal
26	chr19:35660584-35660634	LNCaP	prostate:	n/a
27	chr19:35660584-35660634	HNPCEpiC	eye:	n/a
28	chr19:35660584-35660634	HL-60	blood:	n/a
29	chr19:35660584-35660634	NH-A	brain:	n/a
30	chr19:35660584-35660634	GM12878	blood:	n/a
31	chr19:35660584-35660634	HUVEC	blood vessel:	n/a
32	chr19:35660584-35660634	HRPEpiC	eye:	n/a
33	chr19:35660584-35660634	T-47D	breast:	n/a
34	chr19:35660584-35660634	MCF10A-Er-Src	breast:	n/a
35	chr19:35660584-35660634	HCM	heart:	n/a
36	chr19:35660584-35660634	HCT-116	colon:	n/a
37	chr19:35660584-35660634	IMR90	lung:	fetal
38	chr19:35660584-35660634	A549	lung:	n/a
39	chr19:35660584-35660634	GM12892	blood:	n/a
40	chr19:35660584-35660634	SK-N-MC	brain:	n/a
41	chr19:35660584-35660634	MCF-7	breast:	n/a
42	chr19:35660584-35660634	H1-hESC	embryonic stem cell:	embryo
43	chr19:35660584-35660634	AoSMC	blood vessel:	n/a
44	chr19:35660584-35660634	SK-N-SH	brain:	n/a
45	chr19:35660584-35660634	NHDF-neo	bronchial:	n/a
46	chr19:35660584-35660634	CMK	blood:	n/a
47	chr19:35660584-35660634	HepG2	liver:	n/a
48	chr19:35660584-35660634	BJ	skin:	n/a
49	chr19:35660584-35660634	GM19239	blood:	n/a
50	chr19:35660584-35660634	PrEC	prostate:	n/a

(count:41 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:35654052..35658593-chr19:35736953..35742683,9	K562	blood:
2	chr19:35660384..35663163-chr19:35664605..35666174,2	MCF-7	breast:
3	chr19:35657732..35659414-chr19:35738597..35740391,2	MCF-7	breast:
4	chr19:35655616..35658079-chr19:35755834..35757875,2	MCF-7	breast:
5	chr19:35658538..35660564-chr19:35760467..35762500,2	K562	blood:
6	chr19:35652170..35655595-chr19:35655947..35659208,4	MCF-7	breast:
7	chr19:35644439..35646610-chr19:35662548..35664453,2	MCF-7	breast:
8	chr19:35658448..35660082-chr19:35706961..35709327,2	K562	blood:
9	chr19:35660384..35663163-chr19:35664605..35666174,2	MCF-7	breast:
10	chr19:35670858..35673817-chr19:35687638..35690435,2	K562	blood:
11	chr19:35662152..35664028-chr19:35739883..35742034,2	K562	blood:
12	chr19:35606015..35607604-chr19:35656192..35659125,2	MCF-7	breast:
13	chr19:35653699..35655552-chr19:35738412..35739992,2	K562	blood:
14	chr19:35659935..35661802-chr19:35663380..35667024,3	K562	blood:
15	chr19:35671709..35673473-chr19:35759064..35761234,2	K562	blood:
16	chr19:35662127..35664028-chr19:35738687..35742034,3	K562	blood:
17	chr19:35656896..35658640-chr19:35739040..35741411,2	MCF-7	breast:
18	chr19:35672500..35675529-chr19:35737438..35741898,4	K562	blood:
19	chr19:35662646..35664738-chr19:35675000..35677629,2	K562	blood:
20	chr19:35660696..35663351-chr19:35770755..35773033,2	K562	blood:
21	chr19:35659935..35661487-chr19:35664872..35667024,2	K562	blood:
22	chr19:35656275..35658757-chr19:35668459..35673698,5	K562	blood:
23	chr19:35669103..35671214-chr19:35737457..35739938,2	K562	blood:
24	chr19:35658697..35660776-chr19:35739212..35740943,2	K562	blood:
25	chr19:35660634..35663962-chr19:35667353..35669168,3	K562	blood:
26	chr19:35642928..35645381-chr19:35657672..35659375,2	MCF-7	breast:
27	chr19:35653961..35659020-chr19:35755691..35760689,8	K562	blood:
28	chr19:35666862..35669002-chr19:35676994..35679868,2	K562	blood:
29	chr19:35660634..35663962-chr19:35667353..35669168,3	K562	blood:
30	chr19:35659935..35661487-chr19:35664872..35667024,2	K562	blood:
31	chr19:35653735..35656865-chr19:35656931..35659382,3	MCF-7	breast:
32	chr19:35659935..35661802-chr19:35663380..35667024,3	K562	blood:
33	chr19:35665363..35668225-chr19:35738724..35741368,2	K562	blood:
34	chr19:35653961..35658211-chr19:35756444..35760028,4	K562	blood:
35	chr19:35653833..35655711-chr19:35656998..35660022,4	K562	blood:
36	chr19:35657563..35659340-chr19:35750773..35753172,2	K562	blood:
37	chr19:35659165..35661294-chr19:35670153..35671780,2	K562	blood:
38	chr19:35658586..35660197-chr19:35739044..35740712,2	K562	blood:
39	chr19:35655231..35657834-chr19:35695851..35698454,2	MCF-7	breast:
40	chr19:35656275..35658757-chr19:35668459..35673698,5	K562	blood:
41	chr19:35659165..35661294-chr19:35670153..35671780,2	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FXYD7-2	chr19:35657154-35657228	NR_028406
2	lnc-FXYD7-2	chr19:35657045-35657074	NR_028406
3	lnc-FXYD7-2	chr19:35660469-35660788	NR_028406
4	lnc-FXYD7-2	chr19:35655059-35655148	NR_028406

No data

Variant related genes	Relation type
FXYD5	TF binding region
FXYD5	CpG island
ENSG00000105699	chromatin interactions
ENSG00000089327	chromatin interactions
ENSG00000089356	chromatin interactions
ENSG00000105697	chromatin interactions
ENSG00000105698	chromatin interactions

Extended variants
information (count: 846 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:846 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2901967	chr19:35653642-35653643	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs559921027	chr19:35653778-35653779	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs570011472	chr19:35653840-35653841	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs111449283	chr19:35653901-35653902	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs543176921	chr19:35653940-35653941	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs563162306	chr19:35653941-35653942	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs527445506	chr19:35653947-35653948	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs548788071	chr19:35653966-35653967	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs565806841	chr19:35654023-35654024	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs77118225	chr19:35654067-35654068	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs556948163	chr19:35654068-35654069	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs184211293	chr19:35654151-35654152	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs551360428	chr19:35654154-35654155	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs374791935	chr19:35654216-35654217	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs4806094	chr19:35654231-35654232	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs113883979	chr19:35654249-35654250	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs556767286	chr19:35654282-35654283	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs191144264	chr19:35654288-35654289	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs533897445	chr19:35654308-35654309	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs147706080	chr19:35654309-35654310	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs202016245	chr19:35654324-35654325	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs531762985	chr19:35654351-35654352	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs4806095	chr19:35654375-35654376	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs536083135	chr19:35654398-35654399	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs371572310	chr19:35654400-35654401	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs572549524	chr19:35654434-35654435	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs182463878	chr19:35654439-35654440	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs187239821	chr19:35654445-35654446	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs577484214	chr19:35654466-35654467	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs147350620	chr19:35654478-35654479	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs139469297	chr19:35654489-35654490	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs372420470	chr19:35654574-35654575	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs112210197	chr19:35654576-35654577	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs529069297	chr19:35654640-35654641	Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs113329629	chr19:35654708-35654709	Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs542854428	chr19:35654801-35654802	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs145084717	chr19:35654824-35654825	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs528198927	chr19:35654828-35654829	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs143965143	chr19:35654829-35654830	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs17612800	chr19:35654855-35654856	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs530552198	chr19:35654856-35654857	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs371863295	chr19:35654867-35654868	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs375293473	chr19:35654926-35654927	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs566317921	chr19:35654944-35654945	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs550482252	chr19:35654946-35654947	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs570371024	chr19:35654980-35654981	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs267605426	chr19:35655036-35655037	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs374770117	chr19:35655057-35655058	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs368818836	chr19:35655083-35655084	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
50	rs373475541	chr19:35655084-35655085	Strong transcription Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Ovarian cancer	21397856	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Ovarian cancer	20844748	CNVD
Non-small cell lung cancer	21829676	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cancer	21183584	CNVD
Honadal dysgenesis	21048976	CNVD
Neurodevelopmental disorder	22521361	CNVD
Endometrial cancer	23636398	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Gastric cancer	21811585	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Multiple myeloma	17550852	CNVD
Lung cancer	18438408	CNVD
Gastric cancer	18160780	CNVD
Glioma	17123091	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:727 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35646400-35655000	Weak transcription	Brain Angular Gyrus	brain
2	chr19:35646600-35656800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:35646800-35655000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr19:35647000-35654800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr19:35647000-35654800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr19:35647600-35653800	Strong transcription	HUES6 Cell Line	embryonic stem cell
7	chr19:35647600-35654200	Strong transcription	NHLF	lung
8	chr19:35647600-35655200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr19:35647800-35657000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr19:35648000-35653800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr19:35648000-35654200	Strong transcription	Primary hematopoietic stem cells	blood
12	chr19:35648000-35654800	Strong transcription	H9 Cell Line	embryonic stem cell
13	chr19:35648000-35655000	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr19:35648000-35655200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr19:35648000-35661600	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr19:35648000-35661800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr19:35648200-35653800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr19:35648200-35654000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr19:35648200-35656600	Strong transcription	Fetal Thymus	thymus
20	chr19:35648200-35662800	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr19:35648400-35654000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr19:35648400-35657000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr19:35648600-35654600	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr19:35649200-35657000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr19:35649400-35655000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr19:35649400-35656400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr19:35649400-35656800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr19:35649400-35657400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
29	chr19:35650000-35656600	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr19:35650200-35654000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr19:35650200-35654800	Strong transcription	Gastric	stomach
32	chr19:35650400-35655800	Strong transcription	Duodenum Mucosa	Duodenum
33	chr19:35650600-35654400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr19:35650600-35655400	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr19:35650800-35653800	Weak transcription	Hela-S3	cervix
36	chr19:35650800-35655000	Weak transcription	Fetal Intestine Large	intestine
37	chr19:35650800-35656600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
38	chr19:35651800-35654200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr19:35651800-35657000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
40	chr19:35651800-35657000	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr19:35652000-35657400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr19:35652000-35657600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
43	chr19:35652000-35661800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
44	chr19:35652200-35653800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
45	chr19:35652200-35654200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
46	chr19:35652200-35654200	ZNF genes & repeats	Thymus	Thymus
47	chr19:35652200-35655600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr19:35652200-35657800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr19:35652200-35657800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
50	chr19:35652200-35658000	ZNF genes & repeats	GM12878-XiMat	blood

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