Variant report

Variant	esv2757701
Chromosome Location	chr19:53470514-53554240
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:686)
CpG islands
(count:1162)
Chromatin interactive
region (count:16)
LncRNA
region (count:45)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:686 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr19:53497019-53497409	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr19:53518961-53519336	H1-hESC	embryonic stem cell:	n/a	n/a
3	BHLHE40	chr19:53510497-53510963	K562	blood:	n/a	n/a
4	BHLHE40	chr19:53510493-53510782	GM12878	blood:	n/a	n/a
5	BRCA1	chr19:53548078-53548353	H1-hESC	embryonic stem cell:	n/a	n/a
6	BRCA1	chr19:53497048-53497179	H1-hESC	embryonic stem cell:	n/a	n/a
7	CBX3	chr19:53490152-53490462	K562	blood:	n/a	n/a
8	CBX3	chr19:53470957-53471392	K562	blood:	n/a	n/a
9	CBX3	chr19:53496785-53497423	K562	blood:	n/a	n/a
10	CBX3	chr19:53470970-53471309	K562	blood:	n/a	n/a
11	CBX3	chr19:53487980-53488326	K562	blood:	n/a	n/a
12	CEBPB	chr19:53514645-53514955	HepG2	liver:	n/a	chr19:53514790-53514801
13	CEBPB	chr19:53494277-53495058	Hela-S3	cervix:	n/a	chr19:53494449-53494460
14	CEBPB	chr19:53494284-53494605	IMR90	lung:	n/a	chr19:53494449-53494460
15	CEBPB	chr19:53520052-53520352	K562	blood:	n/a	n/a
16	CEBPB	chr19:53514622-53514961	K562	blood:	n/a	chr19:53514790-53514801
17	CEBPB	chr19:53503344-53503663	HepG2	liver:	n/a	chr19:53503521-53503534 chr19:53503522-53503533 chr19:53503521-53503532 chr19:53503521-53503534 chr19:53503521-53503534
18	CEBPB	chr19:53499048-53499248	K562	blood:	n/a	n/a
19	CEBPB	chr19:53494299-53494580	HepG2	liver:	n/a	chr19:53494449-53494460
20	CEBPB	chr19:53520045-53520364	IMR90	lung:	n/a	n/a
21	CEBPB	chr19:53494404-53494593	H1-hESC	embryonic stem cell:	n/a	chr19:53494449-53494460
22	CEBPB	chr19:53494294-53494605	K562	blood:	n/a	chr19:53494449-53494460
23	CEBPB	chr19:53520162-53520365	MCF-7	breast:	n/a	n/a
24	CEBPB	chr19:53503339-53503575	IMR90	lung:	n/a	chr19:53503521-53503534 chr19:53503522-53503533 chr19:53503521-53503532 chr19:53503521-53503534 chr19:53503521-53503534
25	CEBPB	chr19:53514709-53514946	Hela-S3	cervix:	n/a	chr19:53514790-53514801
26	CEBPB	chr19:53503242-53503648	K562	blood:	n/a	chr19:53503521-53503534 chr19:53503522-53503533 chr19:53503521-53503532 chr19:53503521-53503534 chr19:53503521-53503534
27	CEBPB	chr19:53520072-53520352	H1-hESC	embryonic stem cell:	n/a	n/a
28	CEBPB	chr19:53514683-53514869	A549	lung:	n/a	chr19:53514790-53514801
29	CHD2	chr19:53496834-53497202	H1-hESC	embryonic stem cell:	n/a	n/a
30	CHD2	chr19:53496660-53497280	K562	blood:	n/a	n/a
31	CTCF	chr19:53523080-53523230	BE2_C	brain:	n/a	n/a
32	CTCF	chr19:53496828-53497073	GM20000	blood:	n/a	n/a
33	CTCF	chr19:53497200-53497350	HepG2	liver:	n/a	chr19:53497308-53497329 chr19:53497313-53497331 chr19:53497320-53497328
34	CTCF	chr19:53497258-53497429	GM13977	blood:	n/a	chr19:53497308-53497329 chr19:53497313-53497331 chr19:53497320-53497328
35	CTCF	chr19:53541320-53541470	HCPEpiC	choroid plexus:	n/a	n/a
36	CTCF	chr19:53497248-53497446	Kidney_OC	kidney:	n/a	chr19:53497308-53497329 chr19:53497313-53497331 chr19:53497320-53497328
37	CTCF	chr19:53522895-53523274	H1-hESC	embryonic stem cell:	n/a	n/a
38	CTCF	chr19:53523000-53523150	HA-sp	spinal cord:	n/a	n/a
39	CTCF	chr19:53504303-53504356	GM13976	blood:	n/a	n/a
40	CTCF	chr19:53497240-53497390	AG04449	skin:	n/a	chr19:53497308-53497329 chr19:53497313-53497331 chr19:53497320-53497328
41	CTCF	chr19:53522996-53523308	GM12878	blood:	n/a	n/a
42	CTCF	chr19:53497195-53497392	SK-N-SH_RA	brain:	n/a	chr19:53497308-53497329 chr19:53497313-53497331 chr19:53497320-53497328
43	CTCF	chr19:53497328-53497394	GM12892	blood:	n/a	n/a
44	CTCF	chr19:53513788-53514075	H1-hESC	embryonic stem cell:	n/a	n/a
45	CTCF	chr19:53497266-53497379	MCF-7	breast:	n/a	chr19:53497308-53497329 chr19:53497313-53497331 chr19:53497320-53497328
46	CTCF	chr19:53497221-53497468	NHEK	skin:	n/a	chr19:53497308-53497329 chr19:53497313-53497331 chr19:53497320-53497328
47	CTCF	chr19:53523054-53523213	GM12892	blood:	n/a	n/a
48	CTCF	chr19:53497020-53497170	A549	lung:	n/a	n/a
49	CTCF	chr19:53497265-53497376	GM12878	blood:	n/a	chr19:53497308-53497329 chr19:53497313-53497331 chr19:53497320-53497328
50	CTCF	chr19:53496980-53497130	HMEC	breast:	n/a	n/a

(count:1162 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:53497281-53497331	HRE	kidney:	n/a
2	chr19:53496695-53496745	LNCaP	prostate:	n/a
3	chr19:53497027-53497077	AG04450	lung:	fetal
4	chr19:53497281-53497331	HRE	kidney:	n/a
5	chr19:53496695-53496745	LNCaP	prostate:	n/a
6	chr19:53497027-53497077	AG04450	lung:	fetal
7	chr19:53500997-53501047	CMK	blood:	n/a
8	chr19:53496695-53496745	NH-A	brain:	n/a
9	chr19:53538883-53538933	HMEC	breast:	n/a
10	chr19:53496893-53496943	CMK	blood:	n/a
11	chr19:53496893-53496943	HCM	heart:	n/a
12	chr19:53540902-53540952	HPAEpiC	pulmonary alveolar:	n/a
13	chr19:53540845-53540895	Caco-2	colon:	n/a
14	chr19:53538687-53538737	AG09309	skin:	n/a
15	chr19:53540902-53540952	Caco-2	colon:	n/a
16	chr19:53496835-53496885	Jurkat	blood:	n/a
17	chr19:53496835-53496885	IMR90	lung:	fetal
18	chr19:53496440-53496490	HAEpiC	amniotic membrane:	n/a
19	chr19:53497027-53497077	HepG2	liver:	n/a
20	chr19:53497281-53497331	ovcar-3	ovarian:	n/a
21	chr19:53538883-53538933	HUVEC	blood vessel:	n/a
22	chr19:53496738-53496788	HepG2	liver:	n/a
23	chr19:53497281-53497331	HMEC	breast:	n/a
24	chr19:53541186-53541236	GM12878	blood:	n/a
25	chr19:53497048-53497098	HNPCEpiC	eye:	n/a
26	chr19:53496846-53496896	IMR90	lung:	fetal
27	chr19:53496846-53496896	HEEpiC	esophagus:	n/a
28	chr19:53540902-53540952	GM06990	blood:	n/a
29	chr19:53496664-53496714	T-47D	breast:	n/a
30	chr19:53496664-53496714	A549	lung:	n/a
31	chr19:53540902-53540952	HepG2	liver:	n/a
32	chr19:53496893-53496943	Caco-2	colon:	n/a
33	chr19:53540902-53540952	HRCEpiC	kidney:	n/a
34	chr19:53500997-53501047	SKMC	muscle:	n/a
35	chr19:53538687-53538737	BE2_C	brain:	n/a
36	chr19:53496846-53496896	K562	blood:	n/a
37	chr19:53497281-53497331	A549	lung:	n/a
38	chr19:53496440-53496490	AG04449	skin:	fetal
39	chr19:53493775-53493825	HMEC	breast:	n/a
40	chr19:53496695-53496745	PrEC	prostate:	n/a
41	chr19:53497281-53497331	GM12892	blood:	n/a
42	chr19:53500997-53501047	RPTEC	kidney:	n/a
43	chr19:53496738-53496788	HUVEC	blood vessel:	n/a
44	chr19:53493775-53493825	NHDF-neo	bronchial:	n/a
45	chr19:53496695-53496745	HPAEpiC	pulmonary alveolar:	n/a
46	chr19:53497281-53497331	NHBE	bronchial:	n/a
47	chr19:53496846-53496896	GM12878	blood:	n/a
48	chr19:53540845-53540895	RPTEC	kidney:	n/a
49	chr19:53496664-53496714	HMEC	breast:	n/a
50	chr19:53538883-53538933	K562	blood:	n/a

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:53514929..53517284-chr19:53527300..53529548,2	MCF-7	breast:
2	chr19:53478537..53481849-chr19:53482363..53484640,3	K562	blood:
3	chr14:77866421..77867168-chr19:53501795..53502295,2	MCF-7	breast:
4	chr19:53237008..53239147-chr19:53540786..53542527,2	MCF-7	breast:
5	chr19:53536567..53539141-chr19:53540653..53542425,2	K562	blood:
6	chr19:53478537..53481849-chr19:53482363..53484640,3	K562	blood:
7	chr19:53515874..53517968-chr19:53519511..53521544,2	K562	blood:
8	chr19:53465551..53467815-chr19:53472678..53475651,2	K562	blood:
9	chr19:53464438..53467826-chr19:53467828..53472633,5	K562	blood:
10	chr19:53425712..53428139-chr19:53470752..53473566,2	MCF-7	breast:
11	chr19:53482347..53484833-chr19:53488292..53490832,2	K562	blood:
12	chr10:9353360..9353955-chr19:53525559..53526530,2	MCF-7	breast:
13	chr19:53465058..53468377-chr19:53495533..53497921,4	K562	blood:
14	chr19:53482347..53484833-chr19:53488292..53490832,2	K562	blood:
15	chr19:53466473..53468381-chr19:53486482..53488386,2	K562	blood:
16	chr19:53541069..53542606-chr19:53543581..53546044,2	K562	blood:

(count:45 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF816-2	chr19:53482046-53482206	NONHSAT067612
2	lnc-ZNF816-2	chr19:53489819-53490099	NONHSAT067619
3	lnc-ZNF816-2	chr19:53493346-53493463	NONHSAT067619
4	lnc-ZNF816-2	chr19:53489828-53490099	NONHSAT067613
5	lnc-ZNF816-2	chr19:53496733-53496779	NONHSAT067609
6	lnc-ZNF816-2	chr19:53496733-53496767	NONHSAT067614
7	lnc-ZNF816-2	chr19:53496733-53496779	NONHSAT067610
8	lnc-VN1R2-11	chr19:53485444-53485548	NONHSAT067616
9	lnc-ZNF816-2	chr19:53496733-53496779	NONHSAT067618
10	lnc-ZNF160-1	chr19:53517843-53519833	ENSG00000251255
11	lnc-ZNF816-2	chr19:53540978-53541136	NONHSAT067613
12	lnc-ZNF816-2	chr19:53484089-53484225	ENSG00000269082.1
13	lnc-ZNF816-2	chr19:53482153-53482206	NONHSAT067613
14	lnc-ZNF816-2	chr19:53484145-53484225	NONHSAT067613
15	lnc-ZNF816-2	chr19:53496733-53496784	NONHSAT067619
16	lnc-ZNF816-2	chr19:53489828-53490099	NONHSAT067609
17	lnc-ZNF816-2	chr19:53493346-53493463	NONHSAT067618
18	lnc-ZNF816-2	chr19:53489828-53489972	NONHSAT067617
19	lnc-ZNF816-2	chr19:53493663-53493785	NONHSAT067619
20	lnc-VN1R2-11	chr19:53488013-53488207	NONHSAT067616
21	lnc-ZNF816-2	chr19:53474015-53474095	NONHSAT067609
22	lnc-ZNF816-2	chr19:53484775-53484907	ENSG00000269082.1
23	lnc-ZNF816-2	chr19:53484013-53484225	NONHSAT067614
24	lnc-ZNF816-2	chr19:53484775-53484797	NONHSAT067606
25	lnc-ZNF816-2	chr19:53489828-53490101	NONHSAT067615
26	lnc-ZNF160-1	chr19:53517584-53517806	ENSG00000251255
27	lnc-ZNF816-2	chr19:53484145-53484225	NONHSAT067611
28	lnc-ZNF816-2	chr19:53496733-53496778	NONHSAT067611
29	lnc-ZNF816-2	chr19:53489828-53490099	NONHSAT067612
30	lnc-ZNF816-2	chr19:53489705-53490099	NONHSAT067618
31	lnc-ZNF816-2	chr19:53484195-53484225	NONHSAT067615
32	lnc-ZNF816-2	chr19:53484145-53484225	NONHSAT067609
33	lnc-ZNF816-2	chr19:53489828-53490099	NONHSAT067614
34	lnc-ZNF816-2	chr19:53489828-53490099	NONHSAT067610
35	lnc-ZNF816-2	chr19:53484145-53484225	NONHSAT067606
36	lnc-ZNF816-2	chr19:53486092-53486512	NONHSAT067617
37	lnc-ZNF816-2	chr19:53484089-53484225	NONHSAT067610
38	lnc-ZNF816-2	chr19:53489828-53490099	NONHSAT067611
39	lnc-ZNF816-2	chr19:53496733-53496784	NONHSAT067612
40	lnc-ZNF816-2	chr19:53477295-53477406	NONHSAT067610
41	lnc-ZNF816-2	chr19:53478626-53479053	NONHSAT067611
42	lnc-ZNF816-2	chr19:53473877-53474095	ENSG00000269082.1
43	lnc-ZNF816-2	chr19:53473636-53474095	NONHSAT067606
44	lnc-ZNF816-2	chr19:53484145-53484225	NONHSAT067612
45	lnc-ZNF816-2	chr19:53493346-53493463	NONHSAT067609

No data

Variant related genes	Relation type
ENSG00000268282	TF binding region
ZNF321P	TF binding region
ENSG00000267943	TF binding region
ENSG00000269082	TF binding region
ERVV-1	TF binding region
ERVV-2	TF binding region
ZNF702P	TF binding region
ZNF816	TF binding region
ENSG00000268282	CpG island
ZNF321P	CpG island
ENSG00000267943	CpG island
ENSG00000269082	CpG island
ERVV-1	CpG island
ERVV-2	CpG island
ZNF702P	CpG island
ZNF816	CpG island
ENSG00000269646	chromatin interactions
ENSG00000180257	chromatin interactions
ENSG00000221874	chromatin interactions
ENSG00000213793	chromatin interactions
ENSG00000213020	chromatin interactions
ENSG00000269526	chromatin interactions
ENSG00000242779	chromatin interactions
RNF4	miRNA target sites
GPR107	miRNA target sites

Extended variants
information (count: 3423 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:3423 , 50 per page) page: 1 2 3 4 5 6 7 ... 69

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9304743	chr19:53470514-53470515	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs562468645	chr19:53470542-53470543	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs182108096	chr19:53470641-53470642	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs186323046	chr19:53470668-53470669	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs8100266	chr19:53470709-53470710	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs140404783	chr19:53470713-53470714	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs62116831	chr19:53470754-53470755	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs556836052	chr19:53470779-53470780	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs12610001	chr19:53470791-53470792	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs542192898	chr19:53470803-53470804	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs35368397	chr19:53470831-53470832	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs116628701	chr19:53470867-53470868	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs572206240	chr19:53470878-53470879	Strong transcription ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
14	rs545899491	chr19:53470896-53470897	Strong transcription ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
15	rs563897365	chr19:53470901-53470902	Strong transcription ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
16	rs531418575	chr19:53470943-53470944	Strong transcription ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
17	rs190823572	chr19:53471006-53471007	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
18	rs183537951	chr19:53471019-53471020	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
19	rs12608895	chr19:53471042-53471043	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs149965131	chr19:53471062-53471063	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
21	rs144885485	chr19:53471098-53471099	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
22	rs140841867	chr19:53471108-53471109	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
23	rs188637424	chr19:53471129-53471130	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
24	rs571028694	chr19:53471137-53471138	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
25	rs144669880	chr19:53471139-53471140	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
26	rs556512746	chr19:53471196-53471197	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
27	rs575069941	chr19:53471225-53471226	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
28	rs146513737	chr19:53471254-53471255	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
29	rs75129739	chr19:53471321-53471322	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs138592744	chr19:53471357-53471358	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs12709932	chr19:53471397-53471398	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs192827980	chr19:53471410-53471411	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs564264652	chr19:53471422-53471423	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs140642480	chr19:53471565-53471566	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs543589889	chr19:53471609-53471610	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs183296266	chr19:53471618-53471619	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs529137379	chr19:53471642-53471643	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs142671333	chr19:53471660-53471661	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs4479023	chr19:53471669-53471670	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs559354745	chr19:53471704-53471705	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs10409349	chr19:53471785-53471786	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs187069556	chr19:53471808-53471809	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs541899670	chr19:53471831-53471832	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs1056129	chr19:53471884-53471885	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs536395676	chr19:53471924-53471925	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs191497400	chr19:53472045-53472046	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs550347471	chr19:53472076-53472077	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs8100382	chr19:53472089-53472090	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs143771276	chr19:53472204-53472205	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs57858212	chr19:53472208-53472209	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Adrenocortical carcinoma	18281524	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1145 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53466800-53470600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr19:53466800-53470600	Weak transcription	Psoas Muscle	Psoas
3	chr19:53466800-53472000	Weak transcription	Left Ventricle	heart
4	chr19:53466800-53472000	Weak transcription	Ovary	ovary
5	chr19:53466800-53472600	Weak transcription	Aorta	Aorta
6	chr19:53467000-53479000	Weak transcription	Brain Substantia Nigra	brain
7	chr19:53467000-53489000	Weak transcription	Right Ventricle	heart
8	chr19:53467000-53494600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr19:53467200-53470800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr19:53467200-53471000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr19:53467200-53472000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr19:53467200-53472400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr19:53467200-53472400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr19:53467200-53478800	Weak transcription	Thymus	Thymus
15	chr19:53467200-53480000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr19:53467200-53488600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr19:53467200-53489200	Weak transcription	Colon Smooth Muscle	Colon
18	chr19:53467200-53495400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr19:53467400-53481800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr19:53467800-53471200	Weak transcription	Fetal Kidney	kidney
21	chr19:53470400-53470600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr19:53470400-53470800	ZNF genes & repeats	Fetal Stomach	stomach
23	chr19:53470400-53474200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr19:53470400-53475200	Strong transcription	Placenta	Placenta
25	chr19:53470600-53470800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr19:53470600-53470800	ZNF genes & repeats	Psoas Muscle	Psoas
27	chr19:53470600-53471200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr19:53470800-53471000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr19:53470800-53476600	Weak transcription	Fetal Stomach	stomach
30	chr19:53471000-53471200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr19:53471000-53471600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
32	chr19:53471000-53474600	Weak transcription	Fetal Intestine Large	intestine
33	chr19:53471000-53481600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr19:53471200-53471400	Strong transcription	Fetal Kidney	kidney
35	chr19:53471200-53471600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
36	chr19:53471200-53481200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr19:53471400-53471600	Weak transcription	Fetal Kidney	kidney
38	chr19:53471400-53471600	ZNF genes & repeats	Fetal Lung	lung
39	chr19:53471400-53475400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr19:53471600-53471800	Weak transcription	Fetal Lung	lung
41	chr19:53471600-53474000	Strong transcription	Fetal Kidney	kidney
42	chr19:53471600-53474400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
43	chr19:53471600-53475600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr19:53471600-53487600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr19:53471800-53472200	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr19:53471800-53474000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr19:53471800-53474000	Strong transcription	Fetal Lung	lung
48	chr19:53472000-53472600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr19:53472000-53472600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr19:53472000-53472600	Weak transcription	Esophagus	oesophagus

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