Variant report

Variant	esv2759450
Chromosome Location	chr6:82098060-82161121
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1239 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:1239 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9353006	chr6:82102007-82102008	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs72907019	chr6:82102014-82102015	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs112307297	chr6:82102040-82102041	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs148358908	chr6:82102091-82102092	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs551739670	chr6:82102113-82102114	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs560832310	chr6:82102114-82102115	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs116398037	chr6:82102134-82102135	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs537747473	chr6:82102149-82102150	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs528101621	chr6:82102150-82102151	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs554853195	chr6:82102152-82102153	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs79987684	chr6:82102183-82102184	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs12193166	chr6:82102184-82102185	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs141534544	chr6:82102258-82102259	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs573269068	chr6:82102262-82102263	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs566240844	chr6:82102291-82102292	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs182565034	chr6:82102301-82102302	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs187689375	chr6:82102312-82102313	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs575712250	chr6:82102320-82102321	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs115016781	chr6:82102356-82102357	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs116139579	chr6:82102392-82102393	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs77112181	chr6:82102407-82102408	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs73470515	chr6:82102410-82102411	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs560556863	chr6:82102446-82102447	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs192353045	chr6:82102459-82102460	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs111870954	chr6:82102475-82102476	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs533723046	chr6:82102484-82102485	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs185549762	chr6:82102504-82102505	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs568470851	chr6:82102523-82102524	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs6910975	chr6:82102550-82102551	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs150868146	chr6:82102560-82102561	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs568321217	chr6:82102630-82102631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs533875201	chr6:82102657-82102658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs373701625	chr6:82102661-82102662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs553920745	chr6:82102704-82102705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs570706191	chr6:82102705-82102706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs116727339	chr6:82102743-82102744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs367548096	chr6:82102777-82102778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs553779242	chr6:82102778-82102779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs114445160	chr6:82102883-82102884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs187838887	chr6:82102891-82102892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs1361835	chr6:82102944-82102945	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs554695833	chr6:82102953-82102954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs575062070	chr6:82102956-82102957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs540610548	chr6:82102959-82102960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs560737159	chr6:82102962-82102963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs537549377	chr6:82102966-82102967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs532573320	chr6:82102975-82102976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs545454569	chr6:82102984-82102985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs562261219	chr6:82102985-82102986	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs138483573	chr6:82102994-82102995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	20164919	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82102000-82102400	ZNF genes & repeats	Dnd41	blood
2	chr6:82102200-82102600	ZNF genes & repeats	Aorta	Aorta
3	chr6:82102600-82111400	Weak transcription	Aorta	Aorta
4	chr6:82111400-82111600	Enhancers	HSMMtube	muscle
5	chr6:82111400-82111800	Enhancers	Ovary	ovary
6	chr6:82111400-82112000	Enhancers	Aorta	Aorta
7	chr6:82111400-82112000	Enhancers	NHLF	lung
8	chr6:82111400-82112600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:82111400-82112600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:82111400-82112600	Enhancers	Fetal Heart	heart
11	chr6:82111400-82112600	Enhancers	HSMM	muscle
12	chr6:82111400-82112800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:82111400-82112800	Enhancers	NH-A	brain
14	chr6:82111600-82112000	Flanking Active TSS	HSMMtube	muscle
15	chr6:82111600-82112200	Enhancers	Rectal Smooth Muscle	rectum
16	chr6:82111600-82112400	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr6:82111600-82112600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:82111600-82112600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:82111600-82112600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:82111600-82112600	Enhancers	Osteobl	bone
21	chr6:82111800-82112200	Enhancers	Adipose Nuclei	Adipose
22	chr6:82112000-82112400	Enhancers	NHDF-Ad	bronchial
23	chr6:82112000-82112800	Enhancers	HSMMtube	muscle
24	chr6:82112000-82115800	Weak transcription	Aorta	Aorta
25	chr6:82115800-82116200	Active TSS	Aorta	Aorta
26	chr6:82123000-82123600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:82123200-82123800	Enhancers	Ovary	ovary
28	chr6:82128800-82129400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:82135600-82136200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:82150400-82153000	Enhancers	Placenta	Placenta
31	chr6:82152800-82153200	Enhancers	Stomach Mucosa	stomach
32	chr6:82153200-82154800	Weak transcription	Stomach Mucosa	stomach
33	chr6:82154800-82157800	Enhancers	Stomach Mucosa	stomach
34	chr6:82155000-82156400	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr6:82156400-82156800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr6:82156800-82157000	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr6:82157000-82159600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr6:82157800-82160000	Weak transcription	Stomach Mucosa	stomach
39	chr6:82159000-82159400	Enhancers	Hela-S3	cervix
40	chr6:82159200-82162400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr6:82159400-82159800	Weak transcription	Hela-S3	cervix
42	chr6:82159400-82162000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:82159600-82160800	Enhancers	Osteobl	bone
44	chr6:82159600-82162000	Enhancers	NHDF-Ad	bronchial
45	chr6:82159600-82162200	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr6:82159800-82160400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr6:82159800-82162400	Enhancers	Hela-S3	cervix
48	chr6:82160000-82160200	Enhancers	Stomach Mucosa	stomach
49	chr6:82160000-82160400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:82160000-82160400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links