Variant report

Variant	esv2760117
Chromosome Location	chr10:97426086-97436264
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97419292..97421697-chr10:97434103..97436890,2	K562	blood:
2	chr10:97420551..97423519-chr10:97425006..97428987,4	MCF-7	breast:
3	chr10:97419121..97420755-chr10:97426619..97428887,2	K562	blood:
4	chr10:97425900..97430899-chr10:97432163..97436745,6	MCF-7	breast:
5	chr10:97423928..97425815-chr10:97426176..97427693,2	K562	blood:
6	chr10:97419292..97421837-chr10:97434385..97436890,2	K562	blood:
7	chr10:97425900..97430899-chr10:97432163..97436745,6	MCF-7	breast:
8	chr10:97432190..97434471-chr10:97435814..97437610,2	K562	blood:
9	chr10:97408476..97410603-chr10:97424480..97427139,2	K562	blood:
10	chr10:97416514..97418290-chr10:97425335..97427800,2	MCF-7	breast:
11	chr10:97414503..97416474-chr10:97435645..97437275,2	K562	blood:
12	chr10:97432190..97434471-chr10:97435814..97437610,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000059573	chromatin interactions

Extended variants
information (count: 330 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:330 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10882649	chr10:97426086-97426087	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs578200996	chr10:97426148-97426149	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs374724817	chr10:97426158-97426159	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs72026918	chr10:97426213-97426214	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs377418580	chr10:97426220-97426221	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs60608088	chr10:97426221-97426222	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs72813744	chr10:97426238-97426239	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs147926134	chr10:97426298-97426299	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs577047716	chr10:97426377-97426378	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs199925849	chr10:97426397-97426398	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs117967424	chr10:97426470-97426471	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs182733308	chr10:97426473-97426474	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs541118319	chr10:97426500-97426501	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572711134	chr10:97426501-97426502	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs187689422	chr10:97426517-97426518	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs541488456	chr10:97426526-97426527	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs192727670	chr10:97426581-97426582	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs369506365	chr10:97426621-97426622	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs58174362	chr10:97426623-97426624	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs530546246	chr10:97426628-97426629	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs183131884	chr10:97426704-97426705	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs564146462	chr10:97426791-97426792	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs573116211	chr10:97426845-97426846	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs532689268	chr10:97426969-97426970	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs552840983	chr10:97426973-97426974	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs566239923	chr10:97426999-97427000	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs528714126	chr10:97427042-97427043	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs548675183	chr10:97427092-97427093	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs527941064	chr10:97427148-97427149	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs140223779	chr10:97427154-97427155	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs537587752	chr10:97427198-97427199	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs77585007	chr10:97427210-97427211	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs34145248	chr10:97427243-97427244	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs188460273	chr10:97427260-97427261	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs570872652	chr10:97427302-97427303	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs145633261	chr10:97427371-97427372	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs552865427	chr10:97427375-97427376	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs540431381	chr10:97427422-97427423	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs375639871	chr10:97427428-97427429	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs555175667	chr10:97427432-97427433	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs79937244	chr10:97427434-97427435	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs544338603	chr10:97427438-97427439	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs140915250	chr10:97427444-97427445	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs368895909	chr10:97427470-97427471	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs532954923	chr10:97427477-97427478	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs558983795	chr10:97427495-97427496	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs374647548	chr10:97427540-97427541	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs560113564	chr10:97427569-97427570	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs528822869	chr10:97427576-97427577	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs548786739	chr10:97427583-97427584	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Prostate cancer	16573809	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16912164	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:321 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97416600-97441000	Weak transcription	Spleen	Spleen
2	chr10:97416800-97441600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:97416800-97442400	Weak transcription	Small Intestine	intestine
4	chr10:97416800-97443400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97417000-97428600	Weak transcription	Fetal Kidney	kidney
6	chr10:97417000-97434800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:97417000-97434800	Weak transcription	Ovary	ovary
8	chr10:97417000-97434800	Weak transcription	HUVEC	blood vessel
9	chr10:97417000-97436200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:97417000-97436400	Weak transcription	HMEC	breast
11	chr10:97417000-97437400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:97417000-97439800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:97417000-97439800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:97417000-97439800	Weak transcription	Brain Substantia Nigra	brain
15	chr10:97417000-97441000	Weak transcription	HSMMtube	muscle
16	chr10:97417000-97442400	Weak transcription	Aorta	Aorta
17	chr10:97417000-97444200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:97417000-97445200	Weak transcription	Colonic Mucosa	Colon
19	chr10:97417000-97445800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:97417000-97445800	Weak transcription	NHLF	lung
21	chr10:97417200-97426400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:97417200-97426800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr10:97417200-97430400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:97417200-97435400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr10:97417200-97435400	Weak transcription	Stomach Mucosa	stomach
26	chr10:97417200-97435600	Weak transcription	NH-A	brain
27	chr10:97417200-97436400	Weak transcription	NHDF-Ad	bronchial
28	chr10:97417200-97437400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr10:97417200-97438800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:97417200-97438800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:97417200-97439000	Weak transcription	Fetal Brain Male	brain
32	chr10:97417200-97439600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:97417200-97439800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr10:97417200-97440000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:97417200-97441000	Weak transcription	Thymus	Thymus
36	chr10:97417200-97441800	Weak transcription	Brain Angular Gyrus	brain
37	chr10:97417200-97442400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr10:97417200-97444400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr10:97417200-97445800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr10:97417400-97432600	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:97417400-97439800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr10:97417600-97439000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr10:97420400-97426800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:97420600-97427000	Weak transcription	HSMM	muscle
45	chr10:97420600-97428400	Weak transcription	Osteobl	bone
46	chr10:97421800-97441800	Weak transcription	Gastric	stomach
47	chr10:97422000-97434400	Weak transcription	A549	lung
48	chr10:97423000-97427800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr10:97423000-97429400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:97423000-97429600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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