Variant report

Variant	esv2760147
Chromosome Location	chr10:58890510-58893186
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:58885374..58887771-chr10:58890005..58892664,2	MCF-7	breast:

Extended variants
information (count: 141 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:141 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1967216	chr10:58890510-58890511	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs142068630	chr10:58890547-58890548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs574048496	chr10:58890586-58890587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs79269622	chr10:58890610-58890611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs536571703	chr10:58890656-58890657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs117467789	chr10:58890707-58890708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs558553442	chr10:58890720-58890721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs192419820	chr10:58890721-58890722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs566176619	chr10:58890741-58890742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs527438692	chr10:58890753-58890754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs17608585	chr10:58890761-58890762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs117170897	chr10:58890767-58890768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs55640130	chr10:58890770-58890771	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs549965787	chr10:58890793-58890794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs3104617	chr10:58890835-58890836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs377221857	chr10:58890855-58890856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs547433095	chr10:58890856-58890857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs556268934	chr10:58890859-58890860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs572355757	chr10:58890863-58890864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs538911113	chr10:58890865-58890866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs56324147	chr10:58890883-58890884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs57295288	chr10:58890884-58890885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs553909300	chr10:58890893-58890894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs184787160	chr10:58890897-58890898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs536391702	chr10:58890905-58890906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs555048518	chr10:58890925-58890926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs141270215	chr10:58890935-58890936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs150907909	chr10:58890936-58890937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs529020596	chr10:58890996-58890997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs188812266	chr10:58891006-58891007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs576085635	chr10:58891016-58891017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs138183401	chr10:58891019-58891020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs558705438	chr10:58891030-58891031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs577152913	chr10:58891032-58891033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs541704487	chr10:58891046-58891047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs72509077	chr10:58891048-58891049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs369133158	chr10:58891049-58891050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs72216467	chr10:58891050-58891051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs116918986	chr10:58891073-58891074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs115619819	chr10:58891094-58891095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs369547745	chr10:58891111-58891112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs560979418	chr10:58891130-58891131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs531404713	chr10:58891149-58891150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs193165925	chr10:58891175-58891176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs113584137	chr10:58891242-58891243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs184567634	chr10:58891243-58891244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs189835864	chr10:58891251-58891252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs142773825	chr10:58891253-58891254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs181435373	chr10:58891258-58891259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs564613027	chr10:58891261-58891262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164919	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58886600-58897200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:58893000-58893200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:58893000-58894400	Enhancers	HUES64 Cell Line	embryonic stem cell

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