Variant report

Variant	esv2760321
Chromosome Location	chr13:66196529-66205704
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 263 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:263 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs565956306	chr13:66199485-66199486	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs574820615	chr13:66199508-66199509	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs76830803	chr13:66199613-66199614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs114557975	chr13:66199631-66199632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs572807078	chr13:66199647-66199648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs147944896	chr13:66199654-66199655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs184190389	chr13:66199655-66199656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs576116428	chr13:66199670-66199671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs530535386	chr13:66199715-66199716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs544255585	chr13:66199763-66199764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs201867366	chr13:66199823-66199824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs76496274	chr13:66199832-66199833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs398023136	chr13:66199835-66199836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs200659273	chr13:66199836-66199837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs115603066	chr13:66199849-66199850	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs530058117	chr13:66199872-66199873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs73496654	chr13:66199889-66199890	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs186608336	chr13:66199979-66199980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs532474777	chr13:66199983-66199984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs73496655	chr13:66199996-66199997	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs569289540	chr13:66200017-66200018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs200971501	chr13:66200027-66200028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs3072990	chr13:66200029-66200030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs397838473	chr13:66200043-66200044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs537825814	chr13:66200051-66200052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs530115046	chr13:66200115-66200116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs554588706	chr13:66200170-66200171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs191976369	chr13:66200177-66200178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs964666	chr13:66200191-66200192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs554025873	chr13:66200209-66200210	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs577389262	chr13:66200213-66200214	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs140094699	chr13:66200229-66200230	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs560250696	chr13:66200233-66200234	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs964667	chr13:66200316-66200317	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs964668	chr13:66200362-66200363	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs575459849	chr13:66200372-66200373	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs544218509	chr13:66200378-66200379	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs74091294	chr13:66200379-66200380	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs182796498	chr13:66200383-66200384	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs187117245	chr13:66200395-66200396	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs191931005	chr13:66200396-66200397	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs532320620	chr13:66200432-66200433	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs145516018	chr13:66200441-66200442	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs569329225	chr13:66200456-66200457	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs531730508	chr13:66200494-66200495	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs200744776	chr13:66200509-66200510	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs147698703	chr13:66200531-66200532	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs182180265	chr13:66200535-66200536	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs534194530	chr13:66200536-66200537	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs554462665	chr13:66200653-66200654	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	17245344	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Merkel cell carcinoma	19020549	CNVD
Basal cell lymphoma	17053054	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	21858162	CNVD
Glioblastoma multiforme	21922591	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Breast cancer	17393978	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Colorectal cancer	16774939	CNVD
Adenoid cystic carcinoma	17372589	CNVD
abnormal development	18461090	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Prostate cancer	16461572	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Intellectual disability	21811512	CNVD
Colorectal cancer	21645411	CNVD
Melanoma	20877625	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:66199400-66199600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:66199600-66200200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:66200200-66200800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:66200800-66204800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:66204800-66205200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:66205200-66205400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:66205200-66205600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:66205400-66205600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:66205600-66205800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links