Variant report
Variant | esv2761167 |
---|---|
Chromosome Location | chr8:107846205-107863696 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:17)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:17 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:107857692..107858790-chr8:108507689..108508327,3 | MCF-7 | breast: | |
2 | chr8:107774998..107776443-chr8:107844921..107846410,11 | MCF-7 | breast: | |
3 | chr8:107841111..107842679-chr8:107845386..107847419,2 | MCF-7 | breast: | |
4 | chr8:107858176..107858696-chr8:108791740..108792288,2 | MCF-7 | breast: | |
5 | chr8:107775088..107775609-chr8:107857855..107858702,2 | MCF-7 | breast: | |
6 | chr8:107857881..107858812-chr8:108543880..108545134,4 | MCF-7 | breast: | |
7 | chr8:107716434..107716966-chr8:107858248..107858913,2 | MCF-7 | breast: | |
8 | chr8:107857946..107858782-chr8:107868419..107869393,13 | MCF-7 | breast: | |
9 | chr8:107777209..107777910-chr8:107857636..107858793,3 | MCF-7 | breast: | |
10 | chr8:107857830..107858766-chr8:107868427..107868948,2 | MCF-7 | breast: | |
11 | chr8:107777004..107778114-chr8:107845048..107846673,7 | MCF-7 | breast: | |
12 | chr8:107858296..107858832-chr8:107965934..107966511,2 | MCF-7 | breast: | |
13 | chr8:107777185..107778453-chr8:107844735..107846577,8 | MCF-7 | breast: | |
14 | chr8:107858278..107858789-chr8:108024820..108025365,2 | MCF-7 | breast: | |
15 | chr8:107775145..107775930-chr8:107845378..107846271,5 | MCF-7 | breast: | |
16 | chr8:107776572..107779204-chr8:107860586..107863485,2 | K562 | blood: | |
17 | chr8:107844267..107847790-chr8:107864374..107867207,3 | MCF-7 | breast: |
No data |
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs547624050 | chr8:107846208-107846209 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs573188124 | chr8:107846216-107846217 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs534551684 | chr8:107846253-107846254 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs186056300 | chr8:107846275-107846276 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs2449839 | chr8:107846295-107846296 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
6 | rs527826608 | chr8:107846338-107846339 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs142624925 | chr8:107846363-107846364 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs575013884 | chr8:107846481-107846482 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs150947038 | chr8:107846491-107846492 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs190959881 | chr8:107846497-107846498 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs569068700 | chr8:107846508-107846509 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs112712930 | chr8:107846557-107846558 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs139867238 | chr8:107846564-107846565 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs546032563 | chr8:107846569-107846570 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs182144232 | chr8:107846588-107846589 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs537728375 | chr8:107846666-107846667 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs143319574 | chr8:107846690-107846691 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs549587745 | chr8:107846697-107846698 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs567795301 | chr8:107846706-107846707 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs13265814 | chr8:107846731-107846732 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs576818977 | chr8:107846734-107846735 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs546982642 | chr8:107846746-107846747 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs565718085 | chr8:107846748-107846749 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs187977324 | chr8:107846799-107846800 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs73702440 | chr8:107846815-107846816 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
26 | rs150476532 | chr8:107846817-107846818 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs538410985 | chr8:107846822-107846823 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs190843273 | chr8:107846848-107846849 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs75328547 | chr8:107846864-107846865 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs553004883 | chr8:107846867-107846868 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs183061877 | chr8:107846871-107846872 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs573269756 | chr8:107846892-107846893 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs372247447 | chr8:107846894-107846895 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs531613493 | chr8:107846909-107846910 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs542341017 | chr8:107846980-107846981 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs567458510 | chr8:107847025-107847026 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs545894609 | chr8:107847118-107847119 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs145418133 | chr8:107847132-107847133 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs188652259 | chr8:107847166-107847167 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs192762963 | chr8:107847168-107847169 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs184826661 | chr8:107847195-107847196 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs138822964 | chr8:107847320-107847321 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs528956324 | chr8:107847328-107847329 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs376009455 | chr8:107847382-107847383 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs370017002 | chr8:107847386-107847387 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs531179523 | chr8:107847445-107847446 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs149181615 | chr8:107847454-107847455 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs532911575 | chr8:107847473-107847474 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs116926726 | chr8:107847474-107847475 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
50 | rs187847771 | chr8:107847475-107847476 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Melanoma | 18172304 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Autism | 19415332 | CNVD |
Malaria | 21533027 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Gastric cancer | 17908304 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Breast cancer | 21245420 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Liver carcinoma | 19366792 | CNVD |
Seminomas | 18059402 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Pancreatic cancer | 21811587 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Breast cancer | 17603634 | CNVD |
Testicular cancer | 18059402 | CNVD |
Breast cancer | 17133270 | CNVD |
Breast cancer | 21509527 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Cancer | 20164919 | CNVD |
abnormal development | 18461090 | CNVD |
Oral cancer | 21386901 | CNVD |
Uveal melanoma | 21693616 | CNVD |
Langer-Giedion syndrome | 22283845 | CNVD |
Cancer | 21637783 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Breast cancer | 20632083 | CNVD |
Breast cancer | 19602461 | CNVD |
Cancer | 22429812 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Oral cancer | 19627613 | CNVD |
Prostate cancer | 21088497 | CNVD |
colon cancer | 17210682 | CNVD |
Breast cancer | 21264507 | CNVD |
Breast cancer | 22028636 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Cancer | 16751803 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Gastric cancer | 17167181 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Breast cancer | 16461572 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Medulloblastoma | 16968546 | CNVD |
head and neck squamous cell carcinoma | 18028549 | CNVD |
Breast cancer | 17001317 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 16608533 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Hepatocellular carcinoma | 18803288 | CNVD |
Prostate cancer | 18632612 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Prostate cancer | 16573809 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
Adenocarcinoma | 21044232 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Prostate cancer | 16461572 | CNVD |
Breast cancer | 21399628 | CNVD |
small cell lung cancer | 20016488 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Breast cancer | 17393978 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
Breast cancer | 17899364 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Autosomal-dominant progressive external ophthalmoplegia | 19664747 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Congenital diaphragmatic hernia | 21085971 | CNVD |
Multiple myeloma | 16461302 | CNVD |
Sezary syndrome | 18413736 | CNVD |
Breast cancer | 21611746 | CNVD |
Developmental delay | 21147756 | CNVD |
Congenital diaphragmatic hernia | 21525063 | CNVD |
Breast cancer | 21364760 | CNVD |
Gastric cancer | 22539939 | CNVD |
Non-small cell lung cancer | 19010865 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Colorectal cancer | 21645411 | CNVD |
Breast cancer | 22522925 | CNVD |
T-cell lymphomas | 22341440 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:107845400-107847400 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
2 | chr8:107847400-107847600 | Enhancers | Skeletal Muscle Male | skeletal muscle |
3 | chr8:107847400-107847800 | Enhancers | HepG2 | liver |
4 | chr8:107847400-107848200 | Weak transcription | Fetal Muscle Leg | muscle |
5 | chr8:107848200-107849400 | Enhancers | Fetal Muscle Leg | muscle |
6 | chr8:107848600-107849400 | Enhancers | HSMMtube | muscle |
7 | chr8:107848600-107849800 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
8 | chr8:107848600-107850000 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
9 | chr8:107852000-107852400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
10 | chr8:107852000-107852400 | Enhancers | NHDF-Ad | bronchial |
11 | chr8:107852000-107853600 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
12 | chr8:107852400-107865800 | Weak transcription | NHDF-Ad | bronchial |
13 | chr8:107852600-107853000 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
14 | chr8:107863200-107863800 | Enhancers | Primary T cells from cord blood | blood |