Variant report

Variant	esv2761493
Chromosome Location	chr9:10617850-10627848
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TYRP1-3	chr9:10617861-10620420	ENSG00000226717.2
2	lnc-TYRP1-3	chr9:10617861-10618218	ENSG00000226717

Variant related genes	Relation type
RPAP2	miRNA target sites

Extended variants
information (count: 112 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:112 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534424980	chr9:10617864-10617865	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs142032304	chr9:10617906-10617907	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs115824875	chr9:10617907-10617908	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs62535926	chr9:10617968-10617969	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs564854278	chr9:10617994-10617995	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs575144063	chr9:10618000-10618001	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs544065492	chr9:10618007-10618008	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs145896265	chr9:10618009-10618010	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs147767263	chr9:10618034-10618035	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs189960913	chr9:10618045-10618046	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs566930766	chr9:10618060-10618061	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs182623003	chr9:10618077-10618078	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs2382223	chr9:10618114-10618115	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs2382224	chr9:10618118-10618119	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs12002534	chr9:10618135-10618136	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs575277242	chr9:10618137-10618138	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs187323106	chr9:10618199-10618200	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs528936462	chr9:10618219-10618220	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs373820463	chr9:10618220-10618221	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs548879040	chr9:10618248-10618249	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs538148521	chr9:10618269-10618270	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs568805359	chr9:10618298-10618299	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs41265274	chr9:10618300-10618301	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs574799198	chr9:10618301-10618302	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs10122741	chr9:10618322-10618323	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs376062725	chr9:10618330-10618331	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs192152908	chr9:10618339-10618340	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs72702875	chr9:10618359-10618360	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs183244730	chr9:10618393-10618394	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs188708138	chr9:10618529-10618530	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs575146645	chr9:10618566-10618567	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs576848076	chr9:10618619-10618620	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs543831990	chr9:10618620-10618621	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs554425436	chr9:10618661-10618662	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs574431082	chr9:10618747-10618748	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs374140450	chr9:10618794-10618795	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs540033658	chr9:10618838-10618839	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs560246568	chr9:10618870-10618871	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs369306929	chr9:10618896-10618897	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs532216100	chr9:10618897-10618898	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs371183084	chr9:10618901-10618902	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs193038465	chr9:10618946-10618947	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs376832736	chr9:10618986-10618987	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs7023529	chr9:10619017-10619018	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs562495270	chr9:10619032-10619033	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs148834835	chr9:10619081-10619082	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs548644323	chr9:10619153-10619154	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs568768727	chr9:10619154-10619155	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs113349085	chr9:10619162-10619163	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs7024022	chr9:10619179-10619180	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:101)

Disease	PMID	Source
abnormal development	18461090	CNVD
Disorders of sex development	21048976	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Cancer	20164920	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	21764851	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Gastric cancer	16891809	CNVD
Mental retardation	17847001	CNVD
Cutaneous squamous cell carcinomas	17420988	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21611746	CNVD
Melanoma	22183965	CNVD
Barrett''s syndrome	19417022	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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