Variant report
Variant | esv2761508 |
---|---|
Chromosome Location | chr9:22400968-22819938 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1448)
- CpG islands (count:183)
- Chromatin interactive region (count:22)
- LncRNA region (count:39)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr9:22470036-22470237 | HepG2 | liver: | n/a | n/a |
2 | BACH1 | chr9:22446601-22447549 | H1-hESC | embryonic stem cell: | n/a | n/a |
3 | BCL3 | chr9:22595889-22596111 | GM12878 | blood: | n/a | n/a |
4 | BHLHE40 | chr9:22642399-22642402 | GM12878 | blood: | n/a | n/a |
5 | BHLHE40 | chr9:22813725-22813875 | GM12878 | blood: | n/a | n/a |
6 | BHLHE40 | chr9:22470028-22470208 | GM12878 | blood: | n/a | n/a |
7 | BHLHE40 | chr9:22452449-22452715 | GM12878 | blood: | n/a | n/a |
8 | BRCA1 | chr9:22528539-22528778 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | BRCA1 | chr9:22447348-22447473 | Hela-S3 | cervix: | n/a | n/a |
10 | BRCA1 | chr9:22669815-22669872 | Hela-S3 | cervix: | n/a | n/a |
11 | BRCA1 | chr9:22447786-22447815 | Hela-S3 | cervix: | n/a | n/a |
12 | CEBPB | chr9:22696362-22696521 | Hela-S3 | cervix: | n/a | chr9:22696461-22696470 chr9:22696459-22696472 chr9:22696461-22696470 chr9:22696461-22696470 chr9:22696459-22696472 |
13 | CEBPB | chr9:22776328-22776436 | H1-hESC | embryonic stem cell: | n/a | chr9:22776409-22776418 chr9:22776407-22776418 |
14 | CEBPB | chr9:22625550-22625897 | A549 | lung: | n/a | chr9:22625725-22625736 |
15 | CEBPB | chr9:22549103-22549239 | H1-hESC | embryonic stem cell: | n/a | n/a |
16 | CEBPB | chr9:22693164-22693367 | IMR90 | lung: | n/a | n/a |
17 | CEBPB | chr9:22810956-22811124 | HepG2 | liver: | n/a | chr9:22811049-22811062 chr9:22811049-22811062 chr9:22811050-22811061 chr9:22811049-22811062 chr9:22811049-22811060 |
18 | CEBPB | chr9:22642450-22642606 | A549 | lung: | n/a | chr9:22642528-22642539 |
19 | CEBPB | chr9:22660568-22660768 | Hela-S3 | cervix: | n/a | n/a |
20 | CEBPB | chr9:22589018-22589244 | HepG2 | liver: | n/a | chr9:22589092-22589103 chr9:22589091-22589102 chr9:22589091-22589104 |
21 | CEBPB | chr9:22463228-22463547 | MCF-7 | breast: | n/a | n/a |
22 | CEBPB | chr9:22601268-22601655 | MCF-7 | breast: | n/a | n/a |
23 | CEBPB | chr9:22683693-22684086 | IMR90 | lung: | n/a | n/a |
24 | CEBPB | chr9:22817159-22817473 | IMR90 | lung: | n/a | n/a |
25 | CEBPB | chr9:22589008-22589226 | IMR90 | lung: | n/a | chr9:22589092-22589103 chr9:22589091-22589102 chr9:22589091-22589104 |
26 | CEBPB | chr9:22682459-22682654 | Hela-S3 | cervix: | n/a | n/a |
27 | CEBPB | chr9:22683155-22683272 | A549 | lung: | n/a | chr9:22683166-22683179 |
28 | CEBPB | chr9:22696377-22696528 | H1-hESC | embryonic stem cell: | n/a | chr9:22696461-22696470 chr9:22696459-22696472 chr9:22696461-22696470 chr9:22696461-22696470 chr9:22696459-22696472 |
29 | CEBPB | chr9:22625667-22625834 | MCF-7 | breast: | n/a | chr9:22625725-22625736 |
30 | CEBPB | chr9:22449781-22450073 | A549 | lung: | n/a | n/a |
31 | CEBPB | chr9:22447203-22447557 | MCF-7 | breast: | n/a | n/a |
32 | CEBPB | chr9:22449026-22449297 | A549 | lung: | n/a | n/a |
33 | CEBPB | chr9:22683053-22683457 | Hela-S3 | cervix: | n/a | chr9:22683166-22683179 |
34 | CEBPB | chr9:22447336-22447388 | HepG2 | liver: | n/a | n/a |
35 | CEBPB | chr9:22696309-22696578 | IMR90 | lung: | n/a | chr9:22696461-22696470 chr9:22696459-22696472 chr9:22696461-22696470 chr9:22696461-22696470 chr9:22696459-22696472 |
36 | CEBPB | chr9:22431501-22431716 | HepG2 | liver: | n/a | n/a |
37 | CEBPB | chr9:22463222-22463580 | Hela-S3 | cervix: | n/a | n/a |
38 | CEBPB | chr9:22625551-22625900 | HepG2 | liver: | n/a | chr9:22625725-22625736 |
39 | CEBPB | chr9:22810946-22811142 | IMR90 | lung: | n/a | chr9:22811049-22811062 chr9:22811049-22811062 chr9:22811050-22811061 chr9:22811049-22811062 chr9:22811049-22811060 |
40 | CEBPB | chr9:22401452-22401635 | HepG2 | liver: | n/a | chr9:22401495-22401506 chr9:22401495-22401508 chr9:22401495-22401508 chr9:22401497-22401508 chr9:22401497-22401508 |
41 | CEBPB | chr9:22642451-22642589 | HepG2 | liver: | n/a | chr9:22642528-22642539 |
42 | CEBPB | chr9:22437308-22437334 | IMR90 | lung: | n/a | n/a |
43 | CEBPB | chr9:22534685-22534845 | A549 | lung: | n/a | n/a |
44 | CEBPB | chr9:22683718-22684087 | Hela-S3 | cervix: | n/a | n/a |
45 | CEBPB | chr9:22611394-22611636 | IMR90 | lung: | n/a | chr9:22611512-22611523 |
46 | CEBPB | chr9:22449818-22449988 | Hela-S3 | cervix: | n/a | n/a |
47 | CEBPB | chr9:22709513-22709726 | A549 | lung: | n/a | n/a |
48 | CEBPB | chr9:22625577-22625907 | H1-hESC | embryonic stem cell: | n/a | chr9:22625725-22625736 |
49 | CEBPB | chr9:22776272-22776557 | HepG2 | liver: | n/a | chr9:22776409-22776418 chr9:22776407-22776418 |
50 | CEBPB | chr9:22625549-22625906 | IMR90 | lung: | n/a | chr9:22625725-22625736 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr9:22447694-22447744 | HCPEpiC | choroid plexus: | n/a |
2 | chr9:22447679-22447729 | LNCaP | prostate: | n/a |
3 | chr9:22446830-22446880 | HPAEpiC | pulmonary alveolar: | n/a |
4 | chr9:22447694-22447744 | BE2_C | brain: | n/a |
5 | chr9:22447679-22447729 | NHDF-neo | bronchial: | n/a |
6 | chr9:22447679-22447729 | MCF10A-Er-Src | breast: | n/a |
7 | chr9:22447679-22447729 | SK-N-SH | brain: | n/a |
8 | chr9:22446830-22446880 | HNPCEpiC | eye: | n/a |
9 | chr9:22447679-22447729 | HNPCEpiC | eye: | n/a |
10 | chr9:22446830-22446880 | ECC-1 | luminal epithelium: | n/a |
11 | chr9:22446830-22446880 | H1-hESC | embryonic stem cell: | embryo |
12 | chr9:22447679-22447729 | SK-N-SH_RA | brain: | n/a |
13 | chr9:22447694-22447744 | LNCaP | prostate: | n/a |
14 | chr9:22446830-22446880 | K562 | blood: | n/a |
15 | chr9:22446830-22446880 | AG10803 | skin: | n/a |
16 | chr9:22447679-22447729 | PFSK-1 | brain: | n/a |
17 | chr9:22447694-22447744 | HRPEpiC | eye: | n/a |
18 | chr9:22447679-22447729 | HPAEpiC | pulmonary alveolar: | n/a |
19 | chr9:22447679-22447729 | GM06990 | blood: | n/a |
20 | chr9:22446830-22446880 | PFSK-1 | brain: | n/a |
21 | chr9:22446830-22446880 | HEEpiC | esophagus: | n/a |
22 | chr9:22446830-22446880 | HEK293 | kidney: | embryo |
23 | chr9:22447679-22447729 | AG04450 | lung: | fetal |
24 | chr9:22446830-22446880 | HMEC | breast: | n/a |
25 | chr9:22447679-22447729 | K562 | blood: | n/a |
26 | chr9:22447679-22447729 | U87 | brain: | n/a |
27 | chr9:22446830-22446880 | LNCaP | prostate: | n/a |
28 | chr9:22446830-22446880 | HRE | kidney: | n/a |
29 | chr9:22447694-22447744 | HEK293 | kidney: | embryo |
30 | chr9:22447679-22447729 | CMK | blood: | n/a |
31 | chr9:22447694-22447744 | ovcar-3 | ovarian: | n/a |
32 | chr9:22447694-22447744 | U87 | brain: | n/a |
33 | chr9:22446830-22446880 | SK-N-SH_RA | brain: | n/a |
34 | chr9:22447694-22447744 | AG04450 | lung: | fetal |
35 | chr9:22447679-22447729 | HRPEpiC | eye: | n/a |
36 | chr9:22447694-22447744 | HNPCEpiC | eye: | n/a |
37 | chr9:22447694-22447744 | NT2-D1 | testis: | n/a |
38 | chr9:22446830-22446880 | HCPEpiC | choroid plexus: | n/a |
39 | chr9:22447694-22447744 | AG10803 | skin: | n/a |
40 | chr9:22447694-22447744 | MCF-7 | breast: | n/a |
41 | chr9:22447679-22447729 | T-47D | breast: | n/a |
42 | chr9:22447694-22447744 | HRCEpiC | kidney: | n/a |
43 | chr9:22446830-22446880 | A549 | lung: | n/a |
44 | chr9:22447679-22447729 | HRCEpiC | kidney: | n/a |
45 | chr9:22447679-22447729 | AG10803 | skin: | n/a |
46 | chr9:22447679-22447729 | Caco-2 | colon: | n/a |
47 | chr9:22447694-22447744 | HIPEpiC | eye: | n/a |
48 | chr9:22447694-22447744 | HAEpiC | amniotic membrane: | n/a |
49 | chr9:22447679-22447729 | HUVEC | blood vessel: | n/a |
50 | chr9:22446830-22446880 | HUVEC | blood vessel: | n/a |
(count:22 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr9:22445038..22447734-chr9:22449457..22451257,2 | MCF-7 | breast: | |
2 | chr9:22302782..22305026-chr9:22452967..22455959,2 | MCF-7 | breast: | |
3 | chr9:22307010..22307656-chr9:22452126..22452959,2 | MCF-7 | breast: | |
4 | chr9:22402119..22404171-chr9:22444827..22446805,2 | MCF-7 | breast: | |
5 | chr9:22446916..22448600-chr9:22452229..22454221,2 | MCF-7 | breast: | |
6 | chr15:65596519..65598485-chr9:22707844..22709364,2 | MCF-7 | breast: | |
7 | chr9:22458728..22461056-chr9:22461148..22464605,3 | MCF-7 | breast: | |
8 | chr15:65596780..65597412-chr9:22707344..22708364,4 | MCF-7 | breast: | |
9 | chr9:22427036..22429710-chr9:22446028..22448519,3 | MCF-7 | breast: | |
10 | chr9:22310557..22311090-chr9:22452173..22453079,2 | MCF-7 | breast: | |
11 | chr9:22402119..22404171-chr9:22444827..22446805,2 | MCF-7 | breast: | |
12 | chr15:65596803..65598452-chr9:22707864..22709364,2 | K562 | blood: | |
13 | chr9:22307897..22308732-chr9:22452148..22452666,2 | MCF-7 | breast: | |
14 | chr14:97951358..97952245-chr9:22442748..22443596,2 | MCF-7 | breast: | |
15 | chr9:22446916..22448600-chr9:22452229..22454221,2 | MCF-7 | breast: | |
16 | chr9:22307465..22309728-chr9:22452088..22453632,2 | MCF-7 | breast: | |
17 | chr9:22306745..22307713-chr9:22451254..22452991,10 | MCF-7 | breast: | |
18 | chr9:22308840..22311118-chr9:22450216..22453208,2 | MCF-7 | breast: | |
19 | chr9:22307986..22308923-chr9:22452329..22453109,4 | MCF-7 | breast: | |
20 | chr9:22458728..22461056-chr9:22461148..22464605,3 | MCF-7 | breast: | |
21 | chr9:22813272..22814142-chr9:23088887..23089663,2 | MCF-7 | breast: | |
22 | chr7:2109017..2109524-chr9:22685897..22686685,2 | MCF-7 | breast: |
(count:39 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-DMRTA1-14 | chr9:22764211-22764434 | NONHSAT130447 |
2 | lnc-DMRTA1-2 | chr9:22646199-22646295 | ENSG00000234840.1 |
3 | lnc-DMRTA1-11 | chr9:22715216-22715757 | NONHSAT130445 |
4 | lnc-DMRTA1-1 | chr9:22767174-22767265 | ENSG00000224549 |
5 | lnc-DMRTA1-11 | chr9:22716040-22716456 | NONHSAT130445 |
6 | lnc-DMRTA1-9 | chr9:22602231-22602323 | NONHSAT130439 |
7 | lnc-DMRTA1-2 | chr9:22682609-22682712 | ENSG00000234840.1 |
8 | lnc-DMRTA1-13 | chr9:22757174-22757265 | NONHSAT130448 |
9 | lnc-DMRTA1-2 | chr9:22723308-22723429 | ENSG00000234840.1 |
10 | lnc-DMRTA1-2 | chr9:22674442-22674642 | ENSG00000234840.1 |
11 | lnc-DMRTA1-1 | chr9:22767961-22768315 | ENSG00000224549 |
12 | lnc-DMRTA1-1 | chr9:22687546-22688453 | NONHSAT130441 |
13 | lnc-DMRTA1-11 | chr9:22714322-22715083 | NONHSAT130445 |
14 | lnc-DMRTA1-1 | chr9:22723308-22723429 | NONHSAT130443 |
15 | lnc-DMRTA1-13 | chr9:22757961-22758315 | NONHSAT130448 |
16 | lnc-DMRTA1-2 | chr9:22687546-22687626 | ENSG00000234840.1 |
17 | lnc-DMRTA1-12 | chr9:22728286-22728585 | NONHSAT130446 |
18 | lnc-DMRTA1-8 | chr9:22521541-22521617 | NONHSAT130438 |
19 | lnc-DMRTA1-10 | chr9:22664442-22664642 | l_3742_chr9:22664441-22713435_adipose |
20 | lnc-DMRTA1-14 | chr9:22759737-22759837 | NONHSAT130447 |
21 | lnc-DMRTA1-10 | chr9:22713308-22713435 | l_3742_chr9:22664441-22713435_adipose |
22 | lnc-CDKN2B-5 | chr9:22651795-22652209 | NONHSAT130440 |
23 | lnc-DMRTA1-9 | chr9:22602500-22603039 | NONHSAT130439 |
24 | lnc-DMRTA1-1 | chr9:22674481-22674642 | NONHSAT130443 |
25 | lnc-DMRTA1-12 | chr9:22725718-22725880 | NONHSAT130446 |
26 | lnc-DMRTA1-8 | chr9:22535270-22535651 | NONHSAT130438 |
27 | lnc-DMRTA1-1 | chr9:22674434-22674694 | NONHSAT130441 |
28 | lnc-DMRTA1-1 | chr9:22682469-22683267 | NONHSAT130441 |
29 | lnc-DMRTA1-2 | chr9:22682469-22682712 | ENSG00000234840.1 |
30 | lnc-CDKN2B-5 | chr9:22636866-22636923 | NONHSAT130440 |
31 | lnc-DMRTA1-14 | chr9:22754997-22755223 | NONHSAT130447 |
32 | lnc-DMRTA1-8 | chr9:22524260-22524507 | NONHSAT130438 |
33 | lnc-DMRTA1-1 | chr9:22767174-22767298 | NONHSAT130443 |
34 | lnc-DMRTA1-1 | chr9:22683873-22684083 | NONHSAT130441 |
35 | lnc-DMRTA1-8 | chr9:22532908-22532978 | NONHSAT130438 |
36 | lnc-DMRTA1-10 | chr9:22672609-22672712 | l_3742_chr9:22664441-22713435_adipose |
37 | lnc-DMRTA1-1 | chr9:22767106-22768486 | NONHSAT130449 |
38 | lnc-DMRTA1-1 | chr9:22646108-22646877 | NONHSAT130441 |
39 | lnc-DMRTA1-1 | chr9:22682609-22682712 | NONHSAT130443 |
No data |
No data |
Variant related genes | Relation type |
---|---|
DMRTA1 | TF binding region |
ENSG00000236739 | TF binding region |
ENSG00000234840 | TF binding region |
ENSG00000224549 | TF binding region |
DMRTA1 | CpG island |
ENSG00000236739 | CpG island |
ENSG00000234840 | CpG island |
ENSG00000224549 | CpG island |
ENSG00000200156 | chromatin interactions |
ENSG00000176399 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs1410976 | chr9:22400968-22400969 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
2 | rs77652677 | chr9:22400986-22400987 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs116065430 | chr9:22400988-22400989 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs62555185 | chr9:22401036-22401037 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
5 | rs59171446 | chr9:22401040-22401041 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
6 | rs138256317 | chr9:22401050-22401051 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs142983461 | chr9:22401083-22401084 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs57510332 | chr9:22401157-22401158 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
9 | rs145152744 | chr9:22401168-22401169 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs139037057 | chr9:22401175-22401176 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs191494266 | chr9:22401189-22401190 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs142346063 | chr9:22401191-22401192 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs145925028 | chr9:22401236-22401237 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs545898957 | chr9:22401272-22401273 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs559529998 | chr9:22401337-22401338 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs528089070 | chr9:22401359-22401360 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs62555188 | chr9:22401413-22401414 | Weak transcription Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
18 | rs561730655 | chr9:22401414-22401415 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs531075378 | chr9:22401437-22401438 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs541725415 | chr9:22401517-22401518 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs551276436 | chr9:22401591-22401592 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs561811651 | chr9:22401592-22401593 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs570933513 | chr9:22401593-22401594 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs34596609 | chr9:22401613-22401614 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs36097094 | chr9:22401639-22401640 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs114856392 | chr9:22401646-22401647 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs370776312 | chr9:22401648-22401649 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs566581582 | chr9:22401654-22401655 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs115717029 | chr9:22401681-22401682 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs182466121 | chr9:22401690-22401691 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs376036066 | chr9:22401714-22401715 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs575617734 | chr9:22401736-22401737 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs370401244 | chr9:22401780-22401781 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs560125855 | chr9:22401806-22401807 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs186666829 | chr9:22401811-22401812 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs576954091 | chr9:22401813-22401814 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs372749313 | chr9:22401827-22401828 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs546066351 | chr9:22401828-22401829 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs553207896 | chr9:22401944-22401945 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs574852792 | chr9:22402000-22402001 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs148614734 | chr9:22402057-22402058 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs541960215 | chr9:22402072-22402073 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs561495629 | chr9:22402080-22402081 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs542266663 | chr9:22402107-22402108 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs563755221 | chr9:22402117-22402118 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs141187184 | chr9:22402141-22402142 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs544570305 | chr9:22402168-22402169 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs530918876 | chr9:22402189-22402190 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs533451317 | chr9:22402196-22402197 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs150751671 | chr9:22402266-22402267 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Glioblastoma multiforme | 21080181 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Breast cancer | 16608533 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Breast cancer | 16272173 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Cervical cancer | 21063398 | CNVD |
Retinoblastoma | 22278416 | CNVD |
Splenic marginal zone lymphoma | 18492102 | CNVD |
Melanoma | 18172304 | CNVD |
Biliary cancer | 19435499 | CNVD |
Gastric cancer | 21586687 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Myopathy | 18421352 | CNVD |
Neuroblastoma | 18664255 | CNVD |
Acute lymphoblastic leukemia | 18957548 | CNVD |
Myeloproliferative neoplasm | 17564968 | CNVD |
Malignant meningioma | 17937814 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Glioma | 21971842 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 17603634 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Cutaneous squamous cell carcinomas | 19131950 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Chordoma | 18071362 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chordoma | 21602918 | CNVD |
Renal cell carcinoma | 18592004 | CNVD |
Developmental delay | 19490664 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
microdeletion syndrome | 16199537 | CNVD |
Non-syndromic sensorineural hearing loss | 21987784 | CNVD |
Cancer | 20164919 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Lung cancer | 18438408 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Chronic myeloid leukemia | 21384125 | CNVD |
Breast cancer | 21785460 | CNVD |
Esophageal adenocarcinoma | 19417022 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 21858162 | CNVD |
Renal cell carcinoma | 21668985 | CNVD |
Myelodysplastic syndrome | 21251322 | CNVD |
Autism | 22495311 | CNVD |
Hepatocellular carcinoma | 18803288 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Developmental delay | 21147756 | CNVD |
Pilocytic astrocytoma | 18670637 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Melanoma | 22183965 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Non-small cell lung cancer | 19010865 | CNVD |
Myoepithelioma | 18604193 | CNVD |
Cancer | 22183965 | CNVD |
Glioblastoma multiforme | 21569311 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Ewing''s sarcoma | 22429812 | CNVD |
Neuroblastoma | 21899760 | CNVD |
Glioblastoma multiforme | 19435819 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Glioblastoma multiforme | 22291905 | CNVD |
Lung cancer | 21911935 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
head and neck squamous cell carcinoma | 21798897 | CNVD |
Cancer | 21253487 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Intracranial ependymoma | 16609018 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Acute lymphoblastic leukemia | 17443227 | CNVD |
Barrett''s adenocarcinoma | 18663352 | CNVD |
T-cell acute lymphoblastic leukemia | 19406988 | CNVD |
Urothelial cell carcinoma | 18451213 | CNVD |
Glioma | 17123091 | CNVD |
Mental retardation | 17124404 | CNVD |
Acute lymphoblastic leukemia | 19100363 | CNVD |
Acute lymphoblastic leukemia | 18768390 | CNVD |
Leukemia | 19602459 | CNVD |
Acute monocytic leukemia | 16498392 | CNVD |
Esophageal squamous carcinoma | 18405350 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Leukemia | 18688285 | CNVD |
T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
Acute myeloid leukemia | 19651601 | CNVD |
Coronary Disease | 20032323 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
Cancer | 21732550 | CNVD |
Gastric cancer | 22539939 | CNVD |
Cancer | 21183584 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Diffuse large b-cell lymphoma | 18287131 | CNVD |
Metastatic melanoma | 18483359 | CNVD |
Non-small cell lung cancer | 20864512 | CNVD |
Cervical cancer | 21062161 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Glioblastoma | 17090523 | CNVD |
Lung cancer | 16773561 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Bladder cancer | 19088036 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Melanoma | 16977458 | CNVD |
Glioblastoma multiforme | 17369134 | CNVD |
Chagasic megaesophagus | 20163722 | CNVD |
Melanoma | 19566914 | CNVD |
Squamous cell cancer | 19047905 | CNVD |
Lung adenocarcinoma | 19525976 | CNVD |
Lung cancer | 19525976 | CNVD |
Hodgkin''s lymphoma | 18179710 | CNVD |
Glioma | 20126413 | CNVD |
Melanoma | 17363583 | CNVD |
Glioblastoma multiforme | 19115005 | CNVD |
Glioblastoma multiforme | 21138945 | CNVD |
Adenoid cystic carcinoma | 18332873 | CNVD |
Cancer | 20581869 | CNVD |
Oral cancer | 22144094 | CNVD |
Barrett''s syndrome | 19417022 | CNVD |
Cancer | 20164920 | CNVD |
Breast cancer | 17142309 | CNVD |
Ependymoma | 18628472 | CNVD |
Ewing''s sarcoma | 18628472 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Oral cancer | 21386901 | CNVD |
Breast cancer | 21364760 | CNVD |
Acute myeloid leukemia | 17237825 | CNVD |
Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
Non-small cell lung cancer | 16651412 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Autism | 20858261 | CNVD |
Epilepsy | 20858261 | CNVD |
Mental retardation | 20858261 | CNVD |
Non-syndromic sensorineural hearing loss | 19036926 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Non-syndromic sensorineural hearing loss | 19587683 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Glioblastoma multiforme | 21525872 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:22400200-22406200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
2 | chr9:22401400-22401600 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
3 | chr9:22406200-22406400 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
4 | chr9:22406200-22406600 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
5 | chr9:22413800-22414400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
6 | chr9:22413800-22416400 | Enhancers | Muscle Satellite Cultured Cells | -- |
7 | chr9:22414000-22414600 | Enhancers | HUVEC | blood vessel |
8 | chr9:22414200-22414400 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
9 | chr9:22414400-22415800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
10 | chr9:22414400-22415800 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
11 | chr9:22414600-22415000 | Weak transcription | HUVEC | blood vessel |
12 | chr9:22415000-22416200 | Enhancers | HUVEC | blood vessel |
13 | chr9:22415800-22416600 | Enhancers | NH-A | brain |
14 | chr9:22415800-22416800 | Enhancers | A549 | lung |
15 | chr9:22415800-22417000 | Enhancers | HMEC | breast |
16 | chr9:22415800-22417800 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
17 | chr9:22415800-22418400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
18 | chr9:22416000-22416400 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
19 | chr9:22416000-22417600 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
20 | chr9:22416200-22416600 | Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
21 | chr9:22416200-22417000 | Flanking Active TSS | HUVEC | blood vessel |
22 | chr9:22416400-22416800 | Flanking Active TSS | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
23 | chr9:22416400-22416800 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
24 | chr9:22416400-22417000 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
25 | chr9:22416400-22417000 | Enhancers | HUES48 Cell Line | embryonic stem cell |
26 | chr9:22416400-22417000 | Enhancers | Hela-S3 | cervix |
27 | chr9:22416400-22417200 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
28 | chr9:22416400-22417200 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
29 | chr9:22416400-22417200 | Flanking Active TSS | Muscle Satellite Cultured Cells | -- |
30 | chr9:22416400-22417200 | Enhancers | HSMM | muscle |
31 | chr9:22416400-22417600 | Enhancers | Osteobl | bone |
32 | chr9:22416600-22416800 | Flanking Active TSS | NH-A | brain |
33 | chr9:22416600-22417000 | Flanking Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
34 | chr9:22416600-22417000 | Enhancers | Adipose Nuclei | Adipose |
35 | chr9:22416600-22417000 | Enhancers | Liver | Liver |
36 | chr9:22416600-22417400 | Enhancers | HUES64 Cell Line | embryonic stem cell |
37 | chr9:22416600-22417400 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
38 | chr9:22416600-22417600 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
39 | chr9:22416800-22417000 | Enhancers | NH-A | brain |
40 | chr9:22416800-22417200 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
41 | chr9:22416800-22417400 | Enhancers | H9 Cell Line | embryonic stem cell |
42 | chr9:22416800-22418400 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
43 | chr9:22417000-22417200 | Flanking Active TSS | NH-A | brain |
44 | chr9:22417000-22417400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
45 | chr9:22417000-22418200 | Enhancers | HUVEC | blood vessel |
46 | chr9:22417000-22422400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
47 | chr9:22417000-22425600 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
48 | chr9:22417200-22417800 | Enhancers | NH-A | brain |
49 | chr9:22417200-22418400 | Enhancers | Muscle Satellite Cultured Cells | -- |
50 | chr9:22417200-22422200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |