Variant report

Variant	esv2761580
Chromosome Location	chr10:23804215-23806382
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23793550..23795585-chr10:23803256..23805113,2	MCF-7	breast:

Extended variants
information (count: 100 )
Associated
traits (count: 36 )

Variant overlapped rSNPs/rCNVs (count:100 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7913401	chr10:23804215-23804216	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs532459013	chr10:23804221-23804222	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs78810748	chr10:23804230-23804231	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs571439050	chr10:23804249-23804250	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs530854832	chr10:23804270-23804271	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs11596212	chr10:23804274-23804275	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs550878299	chr10:23804308-23804309	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs141296328	chr10:23804317-23804318	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs369497411	chr10:23804338-23804339	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs375757905	chr10:23804344-23804345	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs536249847	chr10:23804350-23804351	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs11013547	chr10:23804371-23804372	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs561864461	chr10:23804389-23804390	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs1985697	chr10:23804407-23804408	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs11594755	chr10:23804434-23804435	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs544460781	chr10:23804436-23804437	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs370718103	chr10:23804441-23804442	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs185631305	chr10:23804445-23804446	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs189274618	chr10:23804446-23804447	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs115191417	chr10:23804484-23804485	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs544541016	chr10:23804542-23804543	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs539211175	chr10:23804579-23804580	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs554835881	chr10:23804590-23804591	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs574541579	chr10:23804616-23804617	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs540629673	chr10:23804626-23804627	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs560250737	chr10:23804636-23804637	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs191453549	chr10:23804666-23804667	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs533064766	chr10:23804669-23804670	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs551461225	chr10:23804674-23804675	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs183739675	chr10:23804746-23804747	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs1856113	chr10:23804769-23804770	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs12243222	chr10:23804796-23804797	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs145077140	chr10:23804849-23804850	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs138803190	chr10:23804883-23804884	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs529907081	chr10:23804899-23804900	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs546592015	chr10:23804946-23804947	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs74686186	chr10:23804948-23804949	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs527317020	chr10:23804953-23804954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs73602575	chr10:23804957-23804958	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs569151258	chr10:23804964-23804965	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs7067635	chr10:23805013-23805014	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs149357324	chr10:23805021-23805022	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs188871178	chr10:23805032-23805033	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs540539563	chr10:23805061-23805062	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs568697169	chr10:23805072-23805073	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs577152197	chr10:23805086-23805087	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs546318274	chr10:23805119-23805120	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs143802494	chr10:23805152-23805153	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs576557599	chr10:23805195-23805196	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs369568292	chr10:23805219-23805220	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:36)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Glioblastoma multiforme	22286061	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23803800-23805600	Enhancers	Hela-S3	cervix
2	chr10:23805600-23806800	Enhancers	Liver	Liver
3	chr10:23805600-23806800	Enhancers	HepG2	liver
4	chr10:23806200-23807000	Enhancers	Primary monocytes fromperipheralblood	blood

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