Variant report

Variant	esv2761618
Chromosome Location	chr10:96784008-96814689
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:41)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:4)

(count:41 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr10:96795181-96795388	K562	blood:	n/a	n/a
2	CEBPB	chr10:96799245-96799249	A549	lung:	n/a	n/a
3	CEBPB	chr10:96799049-96799196	HepG2	liver:	n/a	chr10:96799080-96799091
4	CTCF	chr10:96795919-96795963	GM20000	blood:	n/a	n/a
5	CTCF	chr10:96792360-96792510	GM12875	blood:	n/a	n/a
6	ELK1	chr10:96798987-96799017	GM12878	blood:	n/a	n/a
7	EP300	chr10:96795106-96795451	Hela-S3	cervix:	n/a	n/a
8	EP300	chr10:96795122-96795421	K562	blood:	n/a	n/a
9	GTF2F1	chr10:96804371-96804374	H1-hESC	embryonic stem cell:	n/a	n/a
10	GTF2F1	chr10:96799846-96799851	H1-hESC	embryonic stem cell:	n/a	n/a
11	JUN	chr10:96799145-96799374	HepG2	liver:	n/a	chr10:96799223-96799232 chr10:96799219-96799232
12	JUN	chr10:96795228-96795396	HepG2	liver:	n/a	chr10:96795298-96795311
13	JUN	chr10:96791445-96791717	HepG2	liver:	n/a	chr10:96791588-96791601
14	JUND	chr10:96787485-96787578	HepG2	liver:	n/a	chr10:96787520-96787531
15	JUND	chr10:96791429-96791662	K562	blood:	n/a	n/a
16	JUND	chr10:96795158-96795430	HepG2	liver:	n/a	n/a
17	JUND	chr10:96791415-96791748	HepG2	liver:	n/a	n/a
18	JUND	chr10:96795145-96795474	K562	blood:	n/a	n/a
19	JUND	chr10:96799060-96799378	HepG2	liver:	n/a	chr10:96799223-96799232
20	MAFF	chr10:96804182-96804494	HepG2	liver:	n/a	chr10:96804324-96804342
21	MAFK	chr10:96804192-96804470	HepG2	liver:	n/a	chr10:96804326-96804341
22	MAFK	chr10:96795353-96795357	HepG2	liver:	n/a	n/a
23	MAFK	chr10:96804175-96804502	HepG2	liver:	n/a	chr10:96804326-96804341
24	MAX	chr10:96791434-96791572	NB4	blood:	n/a	chr10:96791485-96791495
25	MXI1	chr10:96790910-96790967	GM12878	blood:	n/a	n/a
26	POLR2A	chr10:96798002-96798018	GM12878	blood:	n/a	n/a
27	POLR2A	chr10:96811284-96811377	MCF10A-Er-Src	breast:	n/a	n/a
28	POLR2A	chr10:96795839-96795880	MCF10A-Er-Src	breast:	n/a	n/a
29	POLR2A	chr10:96789659-96789859	MCF10A-Er-Src	breast:	n/a	n/a
30	POLR2A	chr10:96804507-96804514	ProgFib	skin:	n/a	n/a
31	POLR2A	chr10:96794280-96794421	MCF10A-Er-Src	breast:	n/a	n/a
32	POLR2A	chr10:96798123-96798227	GM12878	blood:	n/a	n/a
33	POLR2A	chr10:96804528-96804671	ProgFib	skin:	n/a	n/a
34	POLR2A	chr10:96791301-96791852	H1-neurons	neurons:	n/a	n/a
35	POLR2A	chr10:96791449-96791875	H1-neurons	neurons:	n/a	n/a
36	POLR2A	chr10:96798040-96798071	GM12878	blood:	n/a	n/a
37	POLR2A	chr10:96805127-96805171	MCF10A-Er-Src	breast:	n/a	n/a
38	REST	chr10:96791048-96792074	H1-neurons	neurons:	n/a	n/a
39	STAT3	chr10:96803819-96803845	MCF10A-Er-Src	breast:	n/a	n/a
40	TBP	chr10:96791285-96791294	K562	blood:	n/a	n/a
41	WRNIP1	chr10:96791613-96791632	GM12878	blood:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:96796860-96796910	HPAEpiC	pulmonary alveolar:	n/a
2	chr10:96798865-96798915	HRE	kidney:	n/a
3	chr10:96796860-96796910	MCF10A-Er-Src	breast:	n/a
4	chr10:96796860-96796910	PANC-1	pancreas:	n/a
5	chr10:96796860-96796910	HRE	kidney:	n/a
6	chr10:96796860-96796910	HCM	heart:	n/a
7	chr10:96798865-96798915	HPAEpiC	pulmonary alveolar:	n/a
8	chr10:96798865-96798915	NHDF-neo	bronchial:	n/a
9	chr10:96796860-96796910	PrEC	prostate:	n/a
10	chr10:96798865-96798915	HMEC	breast:	n/a
11	chr10:96798865-96798915	NT2-D1	testis:	n/a
12	chr10:96798865-96798915	PFSK-1	brain:	n/a
13	chr10:96798865-96798915	BE2_C	brain:	n/a
14	chr10:96798865-96798915	HL-60	blood:	n/a
15	chr10:96796860-96796910	NHDF-neo	bronchial:	n/a
16	chr10:96796860-96796910	Caco-2	colon:	n/a
17	chr10:96796860-96796910	NB4	blood:	n/a
18	chr10:96796860-96796910	HUVEC	blood vessel:	n/a
19	chr10:96796860-96796910	AG04450	lung:	fetal
20	chr10:96798865-96798915	AoSMC	blood vessel:	n/a
21	chr10:96798865-96798915	SKMC	muscle:	n/a
22	chr10:96796860-96796910	GM12891	blood:	n/a
23	chr10:96796860-96796910	ECC-1	luminal epithelium:	n/a
24	chr10:96798865-96798915	SAEC	small airway:	n/a
25	chr10:96798865-96798915	NHBE	bronchial:	n/a
26	chr10:96798865-96798915	HEEpiC	esophagus:	n/a
27	chr10:96796860-96796910	HMEC	breast:	n/a
28	chr10:96798865-96798915	BJ	skin:	n/a
29	chr10:96796860-96796910	RPTEC	kidney:	n/a
30	chr10:96798865-96798915	RPTEC	kidney:	n/a
31	chr10:96796860-96796910	HCPEpiC	choroid plexus:	n/a
32	chr10:96798865-96798915	HRCEpiC	kidney:	n/a
33	chr10:96798865-96798915	A549	lung:	n/a
34	chr10:96796860-96796910	NH-A	brain:	n/a
35	chr10:96796860-96796910	H1-hESC	embryonic stem cell:	embryo
36	chr10:96796860-96796910	HAEpiC	amniotic membrane:	n/a
37	chr10:96796860-96796910	HRPEpiC	eye:	n/a
38	chr10:96796860-96796910	ovcar-3	ovarian:	n/a
39	chr10:96798865-96798915	AG09309	skin:	n/a
40	chr10:96796860-96796910	HepG2	liver:	n/a
41	chr10:96798865-96798915	HNPCEpiC	eye:	n/a
42	chr10:96798865-96798915	GM12891	blood:	n/a
43	chr10:96798865-96798915	HEK293	kidney:	embryo
44	chr10:96796860-96796910	MCF-7	breast:	n/a
45	chr10:96796860-96796910	GM12892	blood:	n/a
46	chr10:96796860-96796910	GM19239	blood:	n/a
47	chr10:96796860-96796910	HCF	heart:	n/a
48	chr10:96798865-96798915	LNCaP	prostate:	n/a
49	chr10:96796860-96796910	CMK	blood:	n/a
50	chr10:96798865-96798915	HepG2	liver:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYP2C9-1	chr10:96791397-96791805	NONHSAT015746

No data

(count:4 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	CYP2C8	hsa-miR-103a-3p	chr10:96796666-96796691
2	CYP2C8	hsa-miR-103a-3p	chr10:96796640-96796660
3	CYP2C8	hsa-miR-107	chr10:96796640-96796660
4	CYP2C8	hsa-miR-107	chr10:96796666-96796691

Variant related genes	Relation type
ENSG00000237885	TF binding region
CYP2C8	TF binding region
ENSG00000237885	CpG island
CYP2C8	CpG island

Extended variants
information (count: 1008 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:1008 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs548284465	chr10:96784011-96784012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs567833151	chr10:96784027-96784028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs562374635	chr10:96784047-96784048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs186081932	chr10:96784049-96784050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs142361643	chr10:96784067-96784068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs12255990	chr10:96784103-96784104	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs550949865	chr10:96784223-96784224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs539320757	chr10:96784274-96784275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs558637873	chr10:96784279-96784280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs572419957	chr10:96784287-96784288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs541136044	chr10:96784298-96784299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs190888154	chr10:96784299-96784300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs574275573	chr10:96784318-96784319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs181266769	chr10:96784331-96784332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs185278477	chr10:96784337-96784338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs532261234	chr10:96784342-96784343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs546090048	chr10:96784345-96784346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs559054817	chr10:96784350-96784351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs528111342	chr10:96784373-96784374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs113363547	chr10:96784433-96784434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs547954696	chr10:96784446-96784447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs369790170	chr10:96784452-96784453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs140331502	chr10:96784456-96784457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs530309393	chr10:96784460-96784461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs550350396	chr10:96784532-96784533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs190532823	chr10:96784566-96784567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs112152869	chr10:96784589-96784590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs138236496	chr10:96784598-96784599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs565911163	chr10:96784610-96784611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs535050055	chr10:96784679-96784680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs183023522	chr10:96784680-96784681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs527565954	chr10:96784712-96784713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs7901193	chr10:96784723-96784724	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs188652382	chr10:96784735-96784736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs576985632	chr10:96784749-96784750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs192055874	chr10:96784768-96784769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs7900980	chr10:96784778-96784779	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs200156683	chr10:96784815-96784816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs7917728	chr10:96784816-96784817	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs183997945	chr10:96784861-96784862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs561764331	chr10:96784887-96784888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs187650512	chr10:96784942-96784943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs549967260	chr10:96784950-96784951	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs550709342	chr10:96784960-96784961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs570234988	chr10:96784975-96784976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs532766591	chr10:96784977-96784978	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs552576396	chr10:96784992-96784993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs113526640	chr10:96785022-96785023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs191327110	chr10:96785028-96785029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs541871435	chr10:96785037-96785038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Amyotrophic lateral sclerosis	20685689	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96783400-96786000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:96786000-96786400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr10:96786600-96787000	Enhancers	Gastric	stomach
4	chr10:96791600-96791800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr10:96791800-96795000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:96793000-96794000	Enhancers	Gastric	stomach
7	chr10:96793800-96794200	Enhancers	Stomach Mucosa	stomach
8	chr10:96794800-96796400	Weak transcription	Liver	Liver
9	chr10:96795000-96798200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr10:96795400-96795800	Enhancers	Psoas Muscle	Psoas
11	chr10:96795600-96795800	Enhancers	Primary hematopoietic stem cells	blood
12	chr10:96795600-96797400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:96795800-96796800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:96796200-96797600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:96796400-96805400	Strong transcription	Liver	Liver
16	chr10:96796800-96797400	Enhancers	Primary hematopoietic stem cells	blood
17	chr10:96797600-96798400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:96797600-96800400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:96798200-96799600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:96798400-96799400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:96799400-96800600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:96799600-96799800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr10:96799800-96800200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr10:96800200-96800800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr10:96800200-96801200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:96800400-96801200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:96804200-96805200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr10:96804400-96804800	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr10:96804800-96806200	Weak transcription	Aorta	Aorta
30	chr10:96805400-96807800	Genic enhancers	Liver	Liver
31	chr10:96805400-96823600	Weak transcription	Pancreas	Pancrea
32	chr10:96806200-96807000	ZNF genes & repeats	Aorta	Aorta
33	chr10:96807800-96808200	Enhancers	Gastric	stomach
34	chr10:96807800-96809000	Strong transcription	Liver	Liver
35	chr10:96809000-96810800	Genic enhancers	Liver	Liver
36	chr10:96809800-96810000	Enhancers	Gastric	stomach
37	chr10:96809800-96810200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr10:96810800-96811800	Strong transcription	Liver	Liver
39	chr10:96811800-96812600	Genic enhancers	Liver	Liver
40	chr10:96812600-96813800	Strong transcription	Liver	Liver
41	chr10:96813800-96814600	Genic enhancers	Liver	Liver
42	chr10:96814600-96816200	Strong transcription	Liver	Liver

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