Variant report

Variant	esv2762048
Chromosome Location	chr19:52895166-52997571
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:639)
CpG islands
(count:2751)
Chromatin interactive
region (count:23)
LncRNA
region (count:49)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:639 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:52900846-52901131	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:52968190-52968367	K562	blood:	n/a	n/a
3	ARID3A	chr19:52968272-52968330	HepG2	liver:	n/a	n/a
4	BCLAF1	chr19:52900832-52901375	GM12878	blood:	n/a	n/a
5	BHLHE40	chr19:52900942-52901324	GM12878	blood:	n/a	n/a
6	BRCA1	chr19:52956684-52956878	H1-hESC	embryonic stem cell:	n/a	n/a
7	BRCA1	chr19:52996530-52996612	H1-hESC	embryonic stem cell:	n/a	n/a
8	CBX3	chr19:52968146-52968361	K562	blood:	n/a	n/a
9	CBX3	chr19:52977044-52977388	K562	blood:	n/a	n/a
10	CBX3	chr19:52900945-52901284	K562	blood:	n/a	n/a
11	CBX3	chr19:52900872-52901266	K562	blood:	n/a	n/a
12	CEBPB	chr19:52900477-52900699	H1-hESC	embryonic stem cell:	n/a	chr19:52900622-52900635 chr19:52900622-52900633
13	CEBPB	chr19:52996555-52996636	H1-hESC	embryonic stem cell:	n/a	n/a
14	CEBPB	chr19:52993321-52993417	HepG2	liver:	n/a	chr19:52993340-52993349 chr19:52993338-52993351 chr19:52993338-52993349 chr19:52993340-52993349 chr19:52993339-52993350 chr19:52993340-52993349 chr19:52993340-52993349
15	CEBPB	chr19:52981153-52981175	HepG2	liver:	n/a	chr19:52981156-52981167
16	CEBPB	chr19:52900001-52900200	HepG2	liver:	n/a	chr19:52900142-52900153
17	CEBPB	chr19:52971488-52971805	HepG2	liver:	n/a	chr19:52971646-52971657 chr19:52971647-52971656 chr19:52971645-52971658 chr19:52971647-52971656 chr19:52971647-52971656 chr19:52971645-52971656 chr19:52971647-52971656
18	CEBPB	chr19:52900506-52900786	HepG2	liver:	n/a	chr19:52900622-52900635 chr19:52900622-52900633
19	CEBPB	chr19:52971504-52971796	IMR90	lung:	n/a	chr19:52971646-52971657 chr19:52971647-52971656 chr19:52971645-52971658 chr19:52971647-52971656 chr19:52971647-52971656 chr19:52971645-52971656 chr19:52971647-52971656
20	CEBPB	chr19:52971508-52971808	A549	lung:	n/a	chr19:52971646-52971657 chr19:52971647-52971656 chr19:52971645-52971658 chr19:52971647-52971656 chr19:52971647-52971656 chr19:52971645-52971656 chr19:52971647-52971656
21	CEBPB	chr19:52991963-52992022	H1-hESC	embryonic stem cell:	n/a	chr19:52991987-52991998
22	CEBPB	chr19:52991868-52992035	HepG2	liver:	n/a	chr19:52991987-52991998
23	CEBPB	chr19:52967894-52968048	HepG2	liver:	n/a	n/a
24	CEBPB	chr19:52977155-52977373	IMR90	lung:	n/a	n/a
25	CHD1	chr19:52901004-52901064	GM12878	blood:	n/a	n/a
26	CHD1	chr19:52900901-52901048	H1-hESC	embryonic stem cell:	n/a	n/a
27	CHD2	chr19:52968063-52968433	H1-hESC	embryonic stem cell:	n/a	n/a
28	CHD2	chr19:52996409-52996675	H1-hESC	embryonic stem cell:	n/a	n/a
29	CHD2	chr19:52956662-52957034	H1-hESC	embryonic stem cell:	n/a	n/a
30	CHD2	chr19:52956737-52956809	K562	blood:	n/a	n/a
31	CHD2	chr19:52900929-52901173	HepG2	liver:	n/a	n/a
32	CHD2	chr19:52900605-52900664	GM12878	blood:	n/a	n/a
33	CHD2	chr19:52900941-52901401	GM12878	blood:	n/a	n/a
34	CHD2	chr19:52995873-52996149	H1-hESC	embryonic stem cell:	n/a	n/a
35	CHD2	chr19:52968204-52968297	K562	blood:	n/a	n/a
36	CREB1	chr19:52900793-52901346	HepG2	liver:	n/a	n/a
37	CTCF	chr19:52968113-52968436	K562	blood:	n/a	n/a
38	CTCF	chr19:52956520-52956670	HEK293	kidney:	n/a	n/a
39	CTCF	chr19:52957260-52957410	GM12868	blood:	n/a	n/a
40	CTCF	chr19:52968207-52968348	HepG2	liver:	n/a	n/a
41	CTCF	chr19:52966280-52966430	MCF-7	breast:	n/a	n/a
42	CTCF	chr19:52901440-52901590	NHEK	skin:	n/a	n/a
43	CTCF	chr19:52901499-52901500	MCF-7	breast:	n/a	n/a
44	CTCF	chr19:52902000-52902150	SK-N-SH_RA	brain:	n/a	chr19:52902071-52902084
45	CTCF	chr19:52901420-52901570	SK-N-SH_RA	brain:	n/a	n/a
46	CTCF	chr19:52922700-52922797	GM13976	blood:	n/a	n/a
47	CTCF	chr19:52996361-52996748	H1-hESC	embryonic stem cell:	n/a	chr19:52996521-52996529 chr19:52996520-52996541
48	CTCF	chr19:52901420-52901570	GM12875	blood:	n/a	n/a
49	CTCF	chr19:52901002-52901135	Spleen_OC	spleen:	n/a	n/a
50	CTCF	chr19:52901400-52901550	SAEC	small airway:	n/a	n/a

(count:2751 , 50 per page) page: 1 2 3 4 5 6 7 ... 56

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:52956657-52956707	CMK	blood:	n/a
2	chr19:52900988-52901038	SK-N-MC	brain:	n/a
3	chr19:52905427-52905477	K562	blood:	n/a
4	chr19:52933429-52933479	AG10803	skin:	n/a
5	chr19:52956771-52956821	GM06990	blood:	n/a
6	chr19:52900901-52900951	HL-60	blood:	n/a
7	chr19:52956657-52956707	CMK	blood:	n/a
8	chr19:52900988-52901038	SK-N-MC	brain:	n/a
9	chr19:52905427-52905477	K562	blood:	n/a
10	chr19:52933429-52933479	AG10803	skin:	n/a
11	chr19:52956771-52956821	GM06990	blood:	n/a
12	chr19:52900901-52900951	HL-60	blood:	n/a
13	chr19:52956683-52956733	Caco-2	colon:	n/a
14	chr19:52995647-52995697	SK-N-MC	brain:	n/a
15	chr19:52957180-52957230	NHDF-neo	bronchial:	n/a
16	chr19:52996617-52996667	NHDF-neo	bronchial:	n/a
17	chr19:52992415-52992465	HRCEpiC	kidney:	n/a
18	chr19:52904218-52904268	NB4	blood:	n/a
19	chr19:52921300-52921350	SAEC	small airway:	n/a
20	chr19:52900927-52900977	NH-A	brain:	n/a
21	chr19:52954722-52954772	SKMC	muscle:	n/a
22	chr19:52996617-52996667	HRCEpiC	kidney:	n/a
23	chr19:52957051-52957101	Hepatocyte	liver:	n/a
24	chr19:52900974-52901024	BJ	skin:	n/a
25	chr19:52934466-52934516	CMK	blood:	n/a
26	chr19:52957409-52957459	U87	brain:	n/a
27	chr19:52934466-52934516	HCF	heart:	n/a
28	chr19:52992415-52992465	GM19239	blood:	n/a
29	chr19:52934466-52934516	Jurkat	blood:	n/a
30	chr19:52960806-52960856	NHBE	bronchial:	n/a
31	chr19:52956674-52956724	SK-N-MC	brain:	n/a
32	chr19:52900927-52900977	Jurkat	blood:	n/a
33	chr19:52954615-52954665	A549	lung:	n/a
34	chr19:52957051-52957101	MCF10A-Er-Src	breast:	n/a
35	chr19:52995647-52995697	NT2-D1	testis:	n/a
36	chr19:52933695-52933745	SKMC	muscle:	n/a
37	chr19:52954615-52954665	HL-60	blood:	n/a
38	chr19:52956771-52956821	HRE	kidney:	n/a
39	chr19:52960806-52960856	Hepatocyte	liver:	n/a
40	chr19:52901431-52901481	HCM	heart:	n/a
41	chr19:52901431-52901481	NH-A	brain:	n/a
42	chr19:52996352-52996402	NB4	blood:	n/a
43	chr19:52933429-52933479	HPAEpiC	pulmonary alveolar:	n/a
44	chr19:52954615-52954665	BE2_C	brain:	n/a
45	chr19:52933695-52933745	NHDF-neo	bronchial:	n/a
46	chr19:52960806-52960856	GM12878	blood:	n/a
47	chr19:52900469-52900519	HIPEpiC	eye:	n/a
48	chr19:52900988-52901038	HMEC	breast:	n/a
49	chr19:52900974-52901024	IMR90	lung:	fetal
50	chr19:52996083-52996133	HCT-116	colon:	n/a

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:52894967..52896731-chr19:52899629..52901485,2	K562	blood:
2	chr19:52903104..52905523-chr19:52907320..52908934,2	K562	blood:
3	chr19:52641251..52643352-chr19:52987033..52989760,2	MCF-7	breast:
4	chr19:52901728..52903647-chr19:52912630..52914410,2	MCF-7	breast:
5	chr19:52893005..52896642-chr19:52900305..52903556,3	MCF-7	breast:
6	chr19:52771349..52773088-chr19:52900874..52902470,2	MCF-7	breast:
7	chr19:52893005..52896642-chr19:52900305..52903556,3	MCF-7	breast:
8	chr19:52941897..52944459-chr19:52948865..52951747,2	K562	blood:
9	chr19:52976362..52977992-chr19:52978445..52980599,2	K562	blood:
10	chr19:52918301..52920285-chr19:52922376..52925176,2	K562	blood:
11	chr19:52908988..52911904-chr19:52916328..52918022,2	K562	blood:
12	chr19:52918097..52920312-chr19:52920533..52923080,2	MCF-7	breast:
13	chr19:52908988..52911904-chr19:52916328..52918022,2	K562	blood:
14	chr19:52894785..52896519-chr19:52899562..52901653,2	MCF-7	breast:
15	chr19:52918097..52920312-chr19:52920533..52923080,2	MCF-7	breast:
16	chr19:52899758..52902696-chr19:52903314..52905986,3	MCF-7	breast:
17	chr19:52941897..52944459-chr19:52948865..52951747,2	K562	blood:
18	chr19:52899758..52902696-chr19:52903314..52905986,3	MCF-7	breast:
19	chr19:52976362..52977992-chr19:52978445..52980599,2	K562	blood:
20	chr19:52918301..52920285-chr19:52922376..52925176,2	K562	blood:
21	chr19:52894785..52896519-chr19:52899562..52901653,2	MCF-7	breast:
22	chr19:52839189..52842101-chr19:52900021..52902093,2	MCF-7	breast:
23	chr19:52901728..52903647-chr19:52912630..52914410,2	MCF-7	breast:

(count:49 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067545
2	lnc-ZNF83-1	chr19:52900715-52901010	ENSG00000269834.1
3	lnc-ZNF880-1	chr19:52904938-52905006	NONHSAT067550
4	lnc-ZNF534-1	chr19:52960121-52960211	NONHSAT067557
5	lnc-ZNF83-1	chr19:52897584-52899003	ENSG00000246015
6	lnc-ZNF534-1	chr19:52959930-52959989	NONHSAT067557
7	lnc-ZNF83-1	chr19:52892095-52896456	ENSG00000246015
8	lnc-ZNF534-1	chr19:52960121-52960211	NONHSAT067556
9	lnc-ZNF83-1	chr19:52898851-52899003	ENSG00000269834.1
10	lnc-ZNF534-1	chr19:52960121-52960211	NONHSAT067554
11	lnc-ZNF83-1	chr19:52898780-52899003	ENSG00000269834.1
12	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067544
13	lnc-ZNF83-1	chr19:52899892-52900520	ENSG00000269834.1
14	lnc-ZNF534-1	chr19:52961173-52961407	NONHSAT067557
15	lnc-ZNF83-1	chr19:52899569-52899752	ENSG00000246015
16	lnc-ZNF534-2	chr19:52918377-52918606	NONHSAT067551
17	lnc-ZNF83-1	chr19:52899569-52899752	ENSG00000269834.1
18	lnc-ZNF880-1	chr19:52905200-52905270	NONHSAT067550
19	lnc-ZNF534-1	chr19:52961173-52961539	NONHSAT067556
20	lnc-ZNF534-1	chr19:52956835-52962089	NONHSAT067555
21	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067546
22	lnc-ZNF83-1	chr19:52900715-52900985	ENSG00000246015
23	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000246015
24	lnc-ZNF534-1	chr19:52961140-52961760	NONHSAT067554
25	lnc-ZNF534-2	chr19:52914625-52917621	NONHSAT067551
26	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067546
27	lnc-ZNF83-1	chr19:52899618-52899752	ENSG00000269834.1
28	lnc-ZNF83-1	chr19:52900715-52901019	ENSG00000269834.1
29	lnc-ZNF83-1	chr19:52900715-52901010	ENSG00000246015
30	lnc-ZNF83-8	chr19:52929116-52929455	NONHSAT067553
31	lnc-ZNF83-1	chr19:52900715-52900922	ENSG00000269834.1
32	lnc-ZNF534-3	chr19:52976671-52977030	expReg_chr19_8146_+
33	lnc-ZNF534-1	chr19:52956866-52956970	NONHSAT067557
34	lnc-ZNF83-1	chr19:52900715-52901010	NONHSAT067544
35	lnc-ZNF880-1	chr19:52901620-52901872	NONHSAT067550
36	lnc-ZNF83-1	chr19:52899618-52899752	ENSG00000246015
37	lnc-ZNF83-1	chr19:52900448-52900520	ENSG00000269834.1
38	lnc-ZNF83-1	chr19:52898044-52898100	ENSG00000269834.1
39	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000269834.1
40	lnc-ZNF83-1	chr19:52899569-52899752	NONHSAT067545
41	lnc-ZNF534-1	chr19:52956833-52956860	NONHSAT067554
42	lnc-ZNF880-1	chr19:52901153-52901273	NONHSAT067550
43	lnc-ZNF83-1	chr19:52898972-52899003	ENSG00000246015
44	lnc-ZNF83-1	chr19:52899618-52899752	NONHSAT067544
45	lnc-ZNF83-1	chr19:52897580-52899003	NONHSAT067545
46	lnc-ZNF534-2	chr19:52918192-52918292	NONHSAT067551
47	lnc-ZNF83-1	chr19:52899863-52900005	ENSG00000269834.1
48	lnc-ZNF83-1	chr19:52899863-52900005	NONHSAT067545
49	lnc-ZNF534-1	chr19:52956847-52956860	NONHSAT067556

No data

Variant related genes	Relation type
ZNF528	TF binding region
ZNF534	TF binding region
ZNF578	TF binding region
ENSG00000269834	TF binding region
DPPA5P1	TF binding region
ZNF528	CpG island
ZNF534	CpG island
ZNF578	CpG island
ENSG00000269834	CpG island
DPPA5P1	CpG island
ENSG00000196214	chromatin interactions
ENSG00000204611	chromatin interactions
ENSG00000269834	chromatin interactions
ENSG00000167554	chromatin interactions
ENSG00000167555	chromatin interactions
DLL1	miRNA target sites
KIAA0196	miRNA target sites
TPT1	miRNA target sites
CDC23	miRNA target sites
NASP	miRNA target sites
BMP1	miRNA target sites

Extended variants
information (count: 4797 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:4797 , 50 per page) page: 1 2 3 4 5 6 7 ... 96

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12974142	chr19:52895166-52895167	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs563602826	chr19:52895191-52895192	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
3	rs533535355	chr19:52895249-52895250	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
4	rs371920040	chr19:52895250-52895251	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
5	rs371526735	chr19:52895255-52895256	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
6	rs552164418	chr19:52895260-52895261	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
7	rs56374938	chr19:52895294-52895295	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs567702000	chr19:52895296-52895297	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
9	rs145646377	chr19:52895332-52895333	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
10	rs73581144	chr19:52895355-52895356	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs117524660	chr19:52895392-52895393	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
12	rs143991561	chr19:52895410-52895411	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
13	rs557538039	chr19:52895426-52895427	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
14	rs558767064	chr19:52895504-52895505	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
15	rs568818639	chr19:52895507-52895508	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
16	rs7507353	chr19:52895511-52895512	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
17	rs182324128	chr19:52895513-52895514	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
18	rs554141241	chr19:52895516-52895517	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
19	rs7507454	chr19:52895518-52895519	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
20	rs965222	chr19:52895538-52895539	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs113060249	chr19:52895545-52895546	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
22	rs66556645	chr19:52895546-52895547	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
23	rs58617441	chr19:52895556-52895557	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs161636	chr19:52895557-52895558	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	mRNA abundance
25	rs146438546	chr19:52895569-52895570	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
26	rs187851200	chr19:52895577-52895578	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
27	rs35202345	chr19:52895582-52895583	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
28	rs559915238	chr19:52895585-52895586	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
29	rs193099247	chr19:52895629-52895630	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
30	rs35280531	chr19:52895637-52895638	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs185525247	chr19:52895644-52895645	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
32	rs575637479	chr19:52895679-52895680	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
33	rs543152877	chr19:52895705-52895706	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
34	rs561242667	chr19:52895738-52895739	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
35	rs143099236	chr19:52895756-52895757	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
36	rs190047422	chr19:52895774-52895775	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
37	rs565533979	chr19:52895785-52895786	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
38	rs374464007	chr19:52895798-52895799	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
39	rs532853262	chr19:52895805-52895806	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
40	rs565129933	chr19:52895806-52895807	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
41	rs35505665	chr19:52895856-52895857	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
42	rs532615765	chr19:52895862-52895863	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
43	rs550885567	chr19:52895873-52895874	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
44	rs324120	chr19:52895885-52895886	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
45	rs563159184	chr19:52895943-52895944	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
46	rs192045439	chr19:52896003-52896004	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
47	rs34177595	chr19:52896029-52896030	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs566243333	chr19:52896033-52896034	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
49	rs533516570	chr19:52896072-52896073	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
50	rs558132190	chr19:52896084-52896085	Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Adrenocortical carcinoma	18281524	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Lung adenocarcinoma	21935476	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1857 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52888000-52897600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:52888600-52898600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:52889000-52897600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr19:52889000-52898200	Weak transcription	Brain Angular Gyrus	brain
5	chr19:52889000-52898200	Weak transcription	Brain Anterior Caudate	brain
6	chr19:52889200-52900800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr19:52889800-52898600	Weak transcription	Fetal Heart	heart
8	chr19:52890600-52897600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr19:52890600-52898600	Weak transcription	NHDF-Ad	bronchial
10	chr19:52890800-52897600	Weak transcription	Brain Hippocampus Middle	brain
11	chr19:52891200-52896600	ZNF genes & repeats	Fetal Intestine Small	intestine
12	chr19:52891200-52899600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
13	chr19:52891400-52895200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr19:52891400-52895800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr19:52891400-52896800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr19:52891600-52899800	ZNF genes & repeats	Fetal Brain Female	brain
17	chr19:52891800-52895400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
18	chr19:52891800-52896600	ZNF genes & repeats	Brain Germinal Matrix	brain
19	chr19:52892200-52898200	Weak transcription	HSMMtube	muscle
20	chr19:52892600-52895400	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr19:52893000-52898200	Weak transcription	Brain Substantia Nigra	brain
22	chr19:52893400-52900200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr19:52893600-52897600	Weak transcription	Dnd41	blood
24	chr19:52893600-52898200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr19:52893600-52898200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr19:52893800-52896400	Weak transcription	Fetal Lung	lung
27	chr19:52893800-52896800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr19:52893800-52897400	Weak transcription	Ovary	ovary
29	chr19:52893800-52897600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr19:52893800-52898000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr19:52893800-52899600	Weak transcription	Right Ventricle	heart
32	chr19:52894000-52897600	Weak transcription	Pancreas	Pancrea
33	chr19:52894000-52898200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr19:52894000-52900000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr19:52894600-52895200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr19:52894600-52895600	Weak transcription	Fetal Stomach	stomach
37	chr19:52894600-52897400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr19:52894600-52897800	Weak transcription	Osteobl	bone
39	chr19:52894600-52898000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr19:52895000-52895600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr19:52895000-52896600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr19:52895200-52896600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr19:52895200-52898200	Weak transcription	HSMM	muscle
44	chr19:52895400-52897400	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr19:52895600-52896400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr19:52895600-52900400	ZNF genes & repeats	Fetal Stomach	stomach
47	chr19:52895800-52896600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr19:52896200-52896400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr19:52896400-52896800	Strong transcription	Fetal Lung	lung
50	chr19:52896400-52897400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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