Variant report
Variant | esv2762869 |
---|---|
Chromosome Location | chr10:57921330-57936430 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:57747558..57749260-chr10:57921516..57923175,2 | MCF-7 | breast: | |
2 | chr10:57930488..57932712-chr10:57934430..57936445,2 | K562 | blood: | |
3 | chr10:57927604..57930485-chr10:57936536..57938322,2 | K562 | blood: | |
4 | chr10:57930488..57932712-chr10:57934430..57936445,2 | K562 | blood: |
No data |
No data |
No data |
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs150494075 | chr10:57923018-57923019 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs368515686 | chr10:57923039-57923040 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs552733185 | chr10:57923046-57923047 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs572790705 | chr10:57923059-57923060 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs541360707 | chr10:57923120-57923121 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs192816584 | chr10:57923140-57923141 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs145347531 | chr10:57923155-57923156 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs184708577 | chr10:57923179-57923180 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs189030571 | chr10:57923183-57923184 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs75459455 | chr10:57923215-57923216 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs118042709 | chr10:57923258-57923259 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs559490865 | chr10:57923425-57923426 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs78124285 | chr10:57923426-57923427 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs551280982 | chr10:57923447-57923448 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs141373071 | chr10:57923516-57923517 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs536928422 | chr10:57923618-57923619 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs550397174 | chr10:57923635-57923636 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs11005236 | chr10:57923642-57923643 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
19 | rs536007273 | chr10:57923646-57923647 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs552983566 | chr10:57923647-57923648 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs138869565 | chr10:57923702-57923703 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs141906684 | chr10:57923733-57923734 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs558508889 | chr10:57923765-57923766 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs578256721 | chr10:57923865-57923866 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs12247492 | chr10:57923908-57923909 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
26 | rs563920906 | chr10:57923971-57923972 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs2392983 | chr10:57923972-57923973 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
28 | rs371439107 | chr10:57924024-57924025 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs143665834 | chr10:57924045-57924046 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs148096720 | chr10:57924057-57924058 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs373743018 | chr10:57924189-57924190 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs551391396 | chr10:57924190-57924191 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs79012945 | chr10:57924205-57924206 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs141776920 | chr10:57924213-57924214 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs530751737 | chr10:57924227-57924228 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs550456175 | chr10:57924251-57924252 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs567349786 | chr10:57924258-57924259 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs536402927 | chr10:57924279-57924280 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs75259617 | chr10:57924286-57924287 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs546680358 | chr10:57924295-57924296 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs576629651 | chr10:57924343-57924344 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs566533470 | chr10:57924473-57924474 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
43 | rs538333332 | chr10:57924482-57924483 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
44 | rs140497660 | chr10:57924489-57924490 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
45 | rs2392984 | chr10:57924509-57924510 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
46 | rs7922940 | chr10:57924525-57924526 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
47 | rs374332462 | chr10:57924527-57924528 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
48 | rs192620162 | chr10:57924576-57924577 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
49 | rs574169139 | chr10:57924596-57924597 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
50 | rs576093858 | chr10:57934600-57934601 | Enhancers Active TSS | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Pancreatic endocrine tumor | 17639061 | CNVD |
Gastric cancer | 17908304 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Melanoma | 18172304 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Acute lymphoblastic leukemia | 20724749 | CNVD |
Autism | 22495311 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Prostate cancer | 18632612 | CNVD |
Autism | 18414403 | CNVD |
Cockayne syndrome | 18421352 | CNVD |
Glioblastoma | 16823260 | CNVD |
Medulloblastoma | 16968546 | CNVD |
Neuroblastoma | 17533364 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Glioma | 21971842 | CNVD |
Cancer | 21637783 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Liposarcoma | 21253554 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Obesity | 21956041 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21364760 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Autism | 20841430 | CNVD |
Mental retardation | 17124404 | CNVD |
Epilepsy | 20923578 | CNVD |
Prostate cancer | 16573809 | CNVD |
Schizophrenia | 19329560 | CNVD |
Heart failure | 18772530 | CNVD |
Heart failure | 18854381 | CNVD |
Hyperglycemia | 19060297 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Usher syndrome | 20538994 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Autism | 20858243 | CNVD |
Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
small cell lung cancer | 17426248 | CNVD |
Cancer | 20164919 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:57923000-57924400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
2 | chr10:57924400-57924600 | ZNF genes & repeats | iPS DF 6.9 Cell Line | embryonic stem cell |
3 | chr10:57934600-57935000 | Active TSS | Ovary | ovary |
4 | chr10:57934600-57935200 | Active TSS | Right Ventricle | heart |
5 | chr10:57934600-57935400 | Enhancers | Fetal Heart | heart |
6 | chr10:57935400-57937400 | Weak transcription | Fetal Heart | heart |