Variant report

Variant	esv2829960
Chromosome Location	chr11:107661242-107670228
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:107663159..107665072-chr11:107667163..107669875,2	MCF-7	breast:
2	chr11:107670116..107670647-chr11:107768751..107769447,2	MCF-7	breast:
3	chr11:107663159..107665072-chr11:107667163..107669875,2	MCF-7	breast:
4	chr11:107670081..107670628-chr11:107695151..107695710,2	K562	blood:

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	SLC35F2	hsa-miR-155-5p	chr11:107662756-107662777

Extended variants
information (count: 389 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:389 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs553924	chr11:107661242-107661243	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs536825480	chr11:107661271-107661272	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs554881969	chr11:107661283-107661284	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs145782942	chr11:107661297-107661298	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs113995922	chr11:107661301-107661302	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs192199144	chr11:107661309-107661310	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs2016916	chr11:107661352-107661353	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs541103533	chr11:107661390-107661391	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs2016912	chr11:107661396-107661397	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs570626292	chr11:107661410-107661411	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs563951154	chr11:107661458-107661459	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs141973264	chr11:107661495-107661496	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs577329292	chr11:107661511-107661512	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs542764814	chr11:107661519-107661520	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs182178109	chr11:107661522-107661523	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs1807943	chr11:107661576-107661577	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs76558347	chr11:107661582-107661583	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs113544816	chr11:107661592-107661593	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs146852783	chr11:107661611-107661612	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs71047620	chr11:107661622-107661623	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs576328456	chr11:107661624-107661625	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs543218955	chr11:107661625-107661626	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs531958951	chr11:107661674-107661675	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs528092064	chr11:107661716-107661717	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs78329512	chr11:107661721-107661722	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs186914088	chr11:107661802-107661803	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs536554137	chr11:107661831-107661832	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs555099265	chr11:107661835-107661836	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs570260095	chr11:107661863-107661864	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs191741059	chr11:107661878-107661879	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs143540248	chr11:107661889-107661890	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs11277916	chr11:107661893-107661894	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs373993574	chr11:107661894-107661895	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs373484551	chr11:107661930-107661931	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs559080873	chr11:107661959-107661960	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs561327109	chr11:107661975-107661976	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs577444278	chr11:107661978-107661979	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs541388866	chr11:107661982-107661983	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs553099406	chr11:107662004-107662005	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs76722414	chr11:107662025-107662026	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs542552528	chr11:107662048-107662049	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs34326206	chr11:107662062-107662063	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs184329712	chr11:107662102-107662103	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs368128127	chr11:107662130-107662131	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs543240632	chr11:107662133-107662134	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs149356154	chr11:107662134-107662135	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs189800172	chr11:107662153-107662154	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs547330923	chr11:107662192-107662193	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs193164081	chr11:107662219-107662220	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs576494621	chr11:107662246-107662247	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD
Renal cell carcinoma	21668985	CNVD
Cancer	20164920	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Attention deficit hyperactivity disorder	19546859	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	17440070	CNVD

Chromatin state (count:184 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107652000-107665000	Weak transcription	A549	lung
2	chr11:107654000-107676800	Weak transcription	NH-A	brain
3	chr11:107655400-107662800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:107656200-107662200	Weak transcription	GM12878-XiMat	blood
5	chr11:107656600-107663000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:107656600-107673400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:107656600-107679800	Weak transcription	Osteobl	bone
8	chr11:107656800-107673800	Weak transcription	K562	blood
9	chr11:107657000-107662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:107657000-107662200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:107657000-107662600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:107658600-107662600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:107658600-107665600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:107658800-107662200	Weak transcription	NHEK	skin
15	chr11:107658800-107663200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:107658800-107679000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:107658800-107680600	Weak transcription	Small Intestine	intestine
18	chr11:107659000-107662400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:107659000-107662800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:107659000-107679200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:107659200-107662200	Weak transcription	Fetal Intestine Small	intestine
22	chr11:107659200-107662400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:107659200-107663200	Weak transcription	HUVEC	blood vessel
24	chr11:107659200-107665400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:107659200-107665600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:107659400-107679200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:107659800-107664000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:107660000-107661600	Weak transcription	HMEC	breast
29	chr11:107660200-107662200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr11:107660400-107662000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr11:107660400-107664400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:107660600-107662800	Weak transcription	Ovary	ovary
33	chr11:107660800-107662200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:107660800-107662400	Weak transcription	Gastric	stomach
35	chr11:107660800-107663400	Weak transcription	Fetal Stomach	stomach
36	chr11:107660800-107676800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr11:107661000-107662800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr11:107661000-107671200	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:107661000-107678600	Weak transcription	Lung	lung
40	chr11:107661000-107693200	Weak transcription	Spleen	Spleen
41	chr11:107661200-107661600	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr11:107661200-107662000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:107661200-107676000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr11:107661400-107663000	Weak transcription	Primary B cells from cord blood	blood
45	chr11:107661600-107662200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:107661600-107662600	Strong transcription	HMEC	breast
47	chr11:107661600-107663000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:107661600-107663200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:107661600-107665200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:107661600-107679600	Weak transcription	H9 Cell Line	embryonic stem cell

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