Variant report

Variant	esv2830078
Chromosome Location	chrX:58248880-58564037
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59628301..59629147-chrX:58339728..58340665,2	MCF-7	breast:
2	chr9:66822656..66823493-chrX:58560878..58561539,2	MCF-7	breast:
3	chr2:132994674..132995196-chrX:58560687..58561212,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZXDA-3	chrX:58561375-58561549	NONHSAT137294
2	lnc-ZXDA-3	chrX:58556388-58556431	NONHSAT137294

Extended variants
information (count: 7390 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:7390 , 50 per page) page: 1 2 3 4 5 6 7 ... 148

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs145737806	chrX:58250406-58250407	Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs184777607	chrX:58250540-58250541	Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs373458221	chrX:58250659-58250660	Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs188726564	chrX:58250685-58250686	Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs181502397	chrX:58250710-58250711	Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs576951597	chrX:58250834-58250835	Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs138280625	chrX:58250839-58250840	Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs12557263	chrX:58250858-58250859	Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs544676897	chrX:58250974-58250975	Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs562782385	chrX:58250995-58250996	Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs142768188	chrX:58250999-58251000	Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs181920565	chrX:58276785-58276786	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs185922379	chrX:58276790-58276791	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs377158585	chrX:58276792-58276793	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs56060365	chrX:58276973-58276974	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs376484097	chrX:58276987-58276988	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs539211938	chrX:58277013-58277014	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs146026989	chrX:58277047-58277048	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs190782642	chrX:58277063-58277064	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs183025865	chrX:58277138-58277139	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs187934917	chrX:58277457-58277458	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs557946703	chrX:58277460-58277461	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs370927480	chrX:58277576-58277577	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs191552684	chrX:58277698-58277699	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs73627812	chrX:58277877-58277878	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs73627813	chrX:58277883-58277884	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs182963593	chrX:58277884-58277885	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs151175703	chrX:58277962-58277963	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs534818530	chrX:58277972-58277973	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs201131644	chrX:58278188-58278189	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs5947427	chrX:58278219-58278220	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs5947428	chrX:58278341-58278342	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs187598542	chrX:58278427-58278428	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs374147513	chrX:58278433-58278434	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs5947429	chrX:58278462-58278463	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs192414345	chrX:58278517-58278518	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs113578926	chrX:58278543-58278544	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs149901516	chrX:58278547-58278548	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs183404074	chrX:58278720-58278721	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs374454651	chrX:58278737-58278738	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs144907915	chrX:58278742-58278743	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs72621749	chrX:58278832-58278833	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs566201905	chrX:58278883-58278884	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs141957846	chrX:58278903-58278904	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs539920951	chrX:58278955-58278956	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs558167958	chrX:58278965-58278966	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs576350332	chrX:58279013-58279014	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs146915570	chrX:58279048-58279049	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs147946352	chrX:58279073-58279074	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs141772642	chrX:58279104-58279105	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Cancer	21637783	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Cancer	16751803	CNVD
Intellectual disability	23615299	CNVD
Neuroblastoma	18923191	CNVD
Burkitt''s lymphoma	20823134	CNVD
Astrocytoma	17387387	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	21979893	CNVD
Schizophrenia	23904455	CNVD
Olfactory neuroblastoma	18408657	CNVD
infertile	22614455	CNVD
Acute myeloid leukemia	20729466	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	22286061	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	21251322	CNVD
Cancer	20581869	CNVD
Multiple myeloma	20724749	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Cancer	20164919	CNVD
Thyroid cancer	19087340	CNVD
lymphocytic leukemia	21291569	CNVD
Cervical cancer	21062161	CNVD
Follicular lymphoma	20505157	CNVD
primary effusion lymphomas	17116491	CNVD
Testicular germ cell tumor	18059402	CNVD
Testicular cancer	18059402	CNVD
Seminomas	18059402	CNVD
Ovarian cancer	19835627	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:644 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:58250400-58251000	Active TSS	Fetal Heart	heart
2	chrX:58276600-58280000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chrX:58279400-58280200	Enhancers	Brain Hippocampus Middle	brain
4	chrX:58280200-58313600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chrX:58282400-58296600	ZNF genes & repeats	Fetal Stomach	stomach
6	chrX:58290800-58292200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chrX:58295000-58298000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chrX:58307400-58313200	ZNF genes & repeats	Fetal Stomach	stomach
9	chrX:58309600-58309800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
10	chrX:58314600-58315400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chrX:58315600-58318800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
12	chrX:58324800-58326800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chrX:58324800-58331200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
14	chrX:58327800-58329800	ZNF genes & repeats	Adipose Nuclei	Adipose
15	chrX:58330200-58331400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chrX:58330400-58330800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chrX:58330600-58330800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chrX:58330600-58330800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
19	chrX:58330600-58330800	ZNF genes & repeats	Brain Anterior Caudate	brain
20	chrX:58330600-58330800	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chrX:58330600-58330800	ZNF genes & repeats	Left Ventricle	heart
22	chrX:58330600-58330800	ZNF genes & repeats	Ovary	ovary
23	chrX:58330600-58330800	ZNF genes & repeats	Psoas Muscle	Psoas
24	chrX:58330600-58330800	ZNF genes & repeats	Right Ventricle	heart
25	chrX:58330600-58330800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
26	chrX:58330600-58330800	ZNF genes & repeats	A549	lung
27	chrX:58330600-58330800	ZNF genes & repeats	Dnd41	blood
28	chrX:58330600-58330800	ZNF genes & repeats	GM12878-XiMat	blood
29	chrX:58330600-58330800	ZNF genes & repeats	Hela-S3	cervix
30	chrX:58330600-58330800	ZNF genes & repeats	HMEC	breast
31	chrX:58330600-58330800	ZNF genes & repeats	HSMM	muscle
32	chrX:58330600-58330800	ZNF genes & repeats	HSMMtube	muscle
33	chrX:58330600-58330800	ZNF genes & repeats	HUVEC	blood vessel
34	chrX:58330600-58330800	ZNF genes & repeats	K562	blood
35	chrX:58330600-58330800	ZNF genes & repeats	NH-A	brain
36	chrX:58330600-58330800	ZNF genes & repeats	NHDF-Ad	bronchial
37	chrX:58330600-58330800	ZNF genes & repeats	NHEK	skin
38	chrX:58330600-58330800	ZNF genes & repeats	NHLF	lung
39	chrX:58330600-58330800	ZNF genes & repeats	Osteobl	bone
40	chrX:58330600-58331000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
41	chrX:58330800-58331000	Weak transcription	Ovary	ovary
42	chrX:58334800-58340400	ZNF genes & repeats	Liver	Liver
43	chrX:58335800-58337200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
44	chrX:58341400-58343800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
45	chrX:58342000-58343800	ZNF genes & repeats	Adipose Nuclei	Adipose
46	chrX:58342600-58343600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
47	chrX:58342800-58343600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
48	chrX:58350200-58351600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
49	chrX:58355000-58357600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
50	chrX:58355800-58356400	ZNF genes & repeats	Liver	Liver

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