Variant report
Variant | esv2830162 |
---|---|
Chromosome Location | chr6:32450121-32556530 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:953)
- CpG islands (count:6900)
- Chromatin interactive region (count:58)
- LncRNA region (count:8)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr6:32522777-32523015 | HepG2 | liver: | n/a | n/a |
2 | ATF2 | chr6:32543602-32544865 | GM12878 | blood: | n/a | n/a |
3 | ATF2 | chr6:32548141-32548546 | GM12878 | blood: | n/a | n/a |
4 | ATF2 | chr6:32544973-32546270 | GM12878 | blood: | n/a | n/a |
5 | ATF2 | chr6:32543611-32546362 | GM12878 | blood: | n/a | n/a |
6 | BATF | chr6:32498191-32498485 | GM12878 | blood: | n/a | n/a |
7 | BATF | chr6:32497788-32498190 | GM12878 | blood: | n/a | n/a |
8 | BATF | chr6:32537608-32537865 | GM12878 | blood: | n/a | n/a |
9 | BCL11A | chr6:32497757-32498420 | GM12878 | blood: | n/a | n/a |
10 | BCL11A | chr6:32543926-32544477 | GM12878 | blood: | n/a | n/a |
11 | BCL11A | chr6:32545004-32545617 | GM12878 | blood: | n/a | n/a |
12 | BCL3 | chr6:32545035-32545822 | GM12878 | blood: | n/a | n/a |
13 | BCL3 | chr6:32543687-32544523 | GM12878 | blood: | n/a | n/a |
14 | BCL3 | chr6:32544981-32545603 | GM12878 | blood: | n/a | n/a |
15 | BCL3 | chr6:32543622-32544530 | GM12878 | blood: | n/a | n/a |
16 | BCL3 | chr6:32542606-32543106 | GM12878 | blood: | n/a | n/a |
17 | BCLAF1 | chr6:32548062-32548585 | GM12878 | blood: | n/a | n/a |
18 | BCLAF1 | chr6:32548065-32548461 | GM12878 | blood: | n/a | n/a |
19 | BCLAF1 | chr6:32543511-32546294 | GM12878 | blood: | n/a | n/a |
20 | BCLAF1 | chr6:32553630-32554178 | GM12878 | blood: | n/a | n/a |
21 | BCLAF1 | chr6:32543625-32544575 | GM12878 | blood: | n/a | n/a |
22 | BCLAF1 | chr6:32497559-32498097 | GM12878 | blood: | n/a | n/a |
23 | BCLAF1 | chr6:32497233-32498192 | GM12878 | blood: | n/a | n/a |
24 | BCLAF1 | chr6:32555287-32555782 | GM12878 | blood: | n/a | n/a |
25 | BCLAF1 | chr6:32549427-32549909 | GM12878 | blood: | n/a | chr6:32549640-32549649 |
26 | BCLAF1 | chr6:32544982-32546331 | GM12878 | blood: | n/a | n/a |
27 | BCLAF1 | chr6:32555981-32557926 | GM12878 | blood: | n/a | n/a |
28 | BCLAF1 | chr6:32554014-32554513 | GM12878 | blood: | n/a | n/a |
29 | BCLAF1 | chr6:32542671-32543499 | GM12878 | blood: | n/a | n/a |
30 | BHLHE40 | chr6:32517788-32517836 | K562 | blood: | n/a | n/a |
31 | BHLHE40 | chr6:32498065-32498253 | GM12878 | blood: | n/a | n/a |
32 | BHLHE40 | chr6:32493926-32494025 | GM12878 | blood: | n/a | n/a |
33 | BHLHE40 | chr6:32551503-32551512 | GM12878 | blood: | n/a | n/a |
34 | CEBPB | chr6:32519351-32519645 | HepG2 | liver: | n/a | chr6:32519504-32519515 |
35 | CEBPB | chr6:32519464-32519577 | K562 | blood: | n/a | chr6:32519504-32519515 |
36 | CEBPB | chr6:32498060-32498200 | H1-hESC | embryonic stem cell: | n/a | n/a |
37 | CEBPB | chr6:32534489-32534689 | HepG2 | liver: | n/a | n/a |
38 | CEBPB | chr6:32504062-32504262 | A549 | lung: | n/a | n/a |
39 | CEBPB | chr6:32498063-32498112 | K562 | blood: | n/a | n/a |
40 | CHD1 | chr6:32553697-32554853 | GM12878 | blood: | n/a | n/a |
41 | CHD1 | chr6:32553084-32553137 | GM12878 | blood: | n/a | n/a |
42 | CHD1 | chr6:32555302-32557664 | GM12878 | blood: | n/a | n/a |
43 | CHD1 | chr6:32549622-32549754 | GM12878 | blood: | n/a | n/a |
44 | CHD1 | chr6:32497360-32498091 | GM12878 | blood: | n/a | n/a |
45 | CHD2 | chr6:32545419-32545704 | GM12878 | blood: | n/a | n/a |
46 | CHD2 | chr6:32497862-32498076 | GM12878 | blood: | n/a | n/a |
47 | CREB1 | chr6:32497839-32498347 | GM12878 | blood: | n/a | n/a |
48 | CTCF | chr6:32489506-32489582 | MCF-7 | breast: | n/a | n/a |
49 | CTCF | chr6:32526589-32526718 | Lung_OC | lung: | n/a | n/a |
50 | CTCF | chr6:32525555-32525603 | MCF-7 | breast: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:32526669-32526719 | SK-N-SH | brain: | n/a |
2 | chr6:32525813-32525863 | RPTEC | kidney: | n/a |
3 | chr6:32551888-32551938 | SK-N-SH | brain: | n/a |
4 | chr6:32549849-32549899 | SK-N-SH_RA | brain: | n/a |
5 | chr6:32498677-32498727 | HNPCEpiC | eye: | n/a |
6 | chr6:32515069-32515119 | GM12892 | blood: | n/a |
7 | chr6:32490444-32490494 | SK-N-SH_RA | brain: | n/a |
8 | chr6:32526669-32526719 | SK-N-SH | brain: | n/a |
9 | chr6:32525813-32525863 | RPTEC | kidney: | n/a |
10 | chr6:32551888-32551938 | SK-N-SH | brain: | n/a |
11 | chr6:32549849-32549899 | SK-N-SH_RA | brain: | n/a |
12 | chr6:32498677-32498727 | HNPCEpiC | eye: | n/a |
13 | chr6:32515069-32515119 | GM12892 | blood: | n/a |
14 | chr6:32490444-32490494 | SK-N-SH_RA | brain: | n/a |
15 | chr6:32551954-32552004 | CMK | blood: | n/a |
16 | chr6:32556093-32556143 | GM12891 | blood: | n/a |
17 | chr6:32499860-32499910 | SK-N-MC | brain: | n/a |
18 | chr6:32526027-32526077 | Caco-2 | colon: | n/a |
19 | chr6:32499368-32499418 | MCF10A-Er-Src | breast: | n/a |
20 | chr6:32486399-32486449 | PANC-1 | pancreas: | n/a |
21 | chr6:32489750-32489800 | K562 | blood: | n/a |
22 | chr6:32553920-32553970 | CMK | blood: | n/a |
23 | chr6:32551891-32551941 | HepG2 | liver: | n/a |
24 | chr6:32549849-32549899 | HCF | heart: | n/a |
25 | chr6:32515815-32515865 | ECC-1 | luminal epithelium: | n/a |
26 | chr6:32526260-32526310 | Hela-S3 | cervix: | n/a |
27 | chr6:32526021-32526071 | AG04450 | lung: | fetal |
28 | chr6:32496326-32496376 | MCF10A-Er-Src | breast: | n/a |
29 | chr6:32489801-32489851 | SK-N-SH | brain: | n/a |
30 | chr6:32523136-32523186 | NH-A | brain: | n/a |
31 | chr6:32499860-32499910 | HNPCEpiC | eye: | n/a |
32 | chr6:32525805-32525855 | HEK293 | kidney: | embryo |
33 | chr6:32546743-32546793 | AoSMC | blood vessel: | n/a |
34 | chr6:32556093-32556143 | HCT-116 | colon: | n/a |
35 | chr6:32499860-32499910 | SK-N-SH_RA | brain: | n/a |
36 | chr6:32466447-32466497 | HUVEC | blood vessel: | n/a |
37 | chr6:32552106-32552156 | IMR90 | lung: | fetal |
38 | chr6:32485396-32485446 | IMR90 | lung: | fetal |
39 | chr6:32526702-32526752 | GM12892 | blood: | n/a |
40 | chr6:32452388-32452438 | RPTEC | kidney: | n/a |
41 | chr6:32490421-32490471 | Jurkat | blood: | n/a |
42 | chr6:32552246-32552296 | K562 | blood: | n/a |
43 | chr6:32554385-32554435 | HUVEC | blood vessel: | n/a |
44 | chr6:32546743-32546793 | SK-N-SH | brain: | n/a |
45 | chr6:32493917-32493967 | U87 | brain: | n/a |
46 | chr6:32556475-32556525 | H1-hESC | embryonic stem cell: | embryo |
47 | chr6:32526021-32526071 | HUVEC | blood vessel: | n/a |
48 | chr6:32490421-32490471 | Hepatocyte | liver: | n/a |
49 | chr6:32546614-32546664 | Hela-S3 | cervix: | n/a |
50 | chr6:32549935-32549985 | IMR90 | lung: | fetal |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:32526932..32529683-chr6:32550345..32552618,2 | MCF-7 | breast: | |
2 | chr6:32541380..32543244-chr6:32544659..32546648,2 | MCF-7 | breast: | |
3 | chr6:32521669..32522700-chr6:32534356..32535262,5 | MCF-7 | breast: | |
4 | chr6:32489338..32491320-chr6:32492335..32495194,2 | MCF-7 | breast: | |
5 | chr6:32542997..32546229-chr6:32547055..32549461,4 | MCF-7 | breast: | |
6 | chr6:32521673..32522686-chr6:32534361..32535349,9 | MCF-7 | breast: | |
7 | chr6:32521739..32522615-chr6:32530472..32531387,2 | MCF-7 | breast: | |
8 | chr6:32541266..32542954-chr6:32547776..32551278,3 | MCF-7 | breast: | |
9 | chr6:32446571..32447329-chr6:32534338..32534901,2 | MCF-7 | breast: | |
10 | chr6:32536592..32539147-chr6:32551420..32553637,3 | MCF-7 | breast: | |
11 | chr6:32516326..32519059-chr6:32543039..32547182,3 | K562 | blood: | |
12 | chr6:32496441..32498666-chr6:32501268..32503290,2 | MCF-7 | breast: | |
13 | chr6:32519836..32522790-chr6:32547584..32550109,2 | MCF-7 | breast: | |
14 | chr6:32483984..32486232-chr6:32528948..32530708,2 | MCF-7 | breast: | |
15 | chr6:32478863..32481240-chr6:32540968..32542884,2 | K562 | blood: | |
16 | chr6:32543691..32546736-chr6:32549742..32552725,4 | MCF-7 | breast: | |
17 | chr6:32521739..32522687-chr6:32530472..32531394,3 | MCF-7 | breast: | |
18 | chr6:32526956..32529024-chr6:32939826..32941640,2 | MCF-7 | breast: | |
19 | chr6:32521673..32522686-chr6:32534361..32535388,13 | MCF-7 | breast: | |
20 | chr6:32521739..32522687-chr6:32530472..32531394,3 | MCF-7 | breast: | |
21 | chr6:32537173..32539635-chr6:32541454..32544282,2 | MCF-7 | breast: | |
22 | chr6:32526081..32528703-chr6:32550750..32554481,3 | MCF-7 | breast: | |
23 | chr6:32521669..32522700-chr6:32534356..32535262,5 | MCF-7 | breast: | |
24 | chr6:32536592..32539147-chr6:32551420..32553637,3 | MCF-7 | breast: | |
25 | chr6:32548567..32551051-chr6:32674017..32675826,2 | K562 | blood: | |
26 | chr6:32531056..32533444-chr6:32548227..32552178,3 | MCF-7 | breast: | |
27 | chr6:32521673..32522686-chr6:32534361..32535388,13 | MCF-7 | breast: | |
28 | chr6:32543931..32545888-chr6:32553009..32554780,2 | MCF-7 | breast: | |
29 | chr6:32526115..32530219-chr6:32533457..32537358,4 | MCF-7 | breast: | |
30 | chr6:32542997..32546229-chr6:32547055..32549461,4 | MCF-7 | breast: | |
31 | chr6:32541380..32543244-chr6:32544659..32546648,2 | MCF-7 | breast: | |
32 | chr6:32497873..32498399-chr6:32557101..32557832,2 | HCT-116 | colon: | |
33 | chr6:32540752..32543456-chr6:32544418..32546730,2 | MCF-7 | breast: | |
34 | chr6:32533882..32536611-chr6:32536867..32538539,2 | MCF-7 | breast: | |
35 | chr6:32521739..32522615-chr6:32530472..32531387,2 | MCF-7 | breast: | |
36 | chr6:32489338..32491320-chr6:32492335..32495194,2 | MCF-7 | breast: | |
37 | chr6:32546755..32548791-chr6:32550343..32552231,2 | MCF-7 | breast: | |
38 | chr6:32483984..32486232-chr6:32528948..32530708,2 | MCF-7 | breast: | |
39 | chr6:32537173..32539635-chr6:32541454..32544282,2 | MCF-7 | breast: | |
40 | chr6:32478863..32481240-chr6:32540968..32542884,2 | K562 | blood: | |
41 | chr6:32533882..32536611-chr6:32536867..32538539,2 | MCF-7 | breast: | |
42 | chr6:32540752..32543456-chr6:32544418..32546730,2 | MCF-7 | breast: | |
43 | chr6:32428191..32430542-chr6:32458841..32460810,2 | MCF-7 | breast: | |
44 | chr6:32531056..32533444-chr6:32548227..32552178,3 | MCF-7 | breast: | |
45 | chr6:32547452..32553622-chr6:32554180..32560378,10 | MCF-7 | breast: | |
46 | chr6:32525928..32528506-chr6:32628820..32630854,2 | MCF-7 | breast: | |
47 | chr6:32519836..32522790-chr6:32547584..32550109,2 | MCF-7 | breast: | |
48 | chr6:32521673..32522686-chr6:32534361..32535349,9 | MCF-7 | breast: | |
49 | chr6:32543931..32545888-chr6:32553009..32554780,2 | MCF-7 | breast: | |
50 | chr6:32546755..32548791-chr6:32550343..32552231,2 | MCF-7 | breast: |
(count:8 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-HLA-DRA-5 | chr6:32475256-32475512 | NONHSAT108909 |
2 | lnc-HLA-DQA1-7 | chr6:32549461-32549608 | NONHSAT108916 |
3 | lnc-HLA-DQA1-7 | chr6:32549438-32549606 | NONHSAT108910 |
4 | lnc-HLA-DQA1-7 | chr6:32522471-32522593 | NONHSAT108916 |
5 | lnc-HLA-DQA1-7 | chr6:32487174-32487196 | NONHSAT108910 |
6 | lnc-HLA-DRA-4 | chr6:32474307-32474692 | NONHSAT108908 |
7 | lnc-HLA-DQA1-7 | chr6:32522517-32522570 | NONHSAT108910 |
8 | lnc-HLA-DRB1-4 | chr6:32546123-32546497 | NONHSAT108917 |
No data |
No data |
Variant related genes | Relation type |
---|---|
RNU1-61P | TF binding region |
HLA-DRB6 | TF binding region |
HLA-DRB5 | TF binding region |
RNU1-61P | CpG island |
HLA-DRB6 | CpG island |
HLA-DRB5 | CpG island |
ENSG00000235040 | chromatin interactions |
ENSG00000229391 | chromatin interactions |
ENSG00000263756 | chromatin interactions |
ENSG00000251916 | chromatin interactions |
ENSG00000196126 | chromatin interactions |
ENSG00000204256 | chromatin interactions |
ENSG00000241287 | chromatin interactions |
ENSG00000198502 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs144181804 | chr6:32450121-32450122 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
2 | rs202102492 | chr6:32450127-32450128 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
3 | rs67384805 | chr6:32450128-32450129 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
4 | rs5020945 | chr6:32450134-32450135 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | mRNA abundance |
5 | rs5020944 | chr6:32450140-32450141 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | mRNA abundance |
6 | rs111918110 | chr6:32450149-32450150 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
7 | rs569302716 | chr6:32450151-32450152 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
8 | rs2395196 | chr6:32450154-32450155 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | mRNA abundance |
9 | rs112906696 | chr6:32450174-32450175 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
10 | rs113498629 | chr6:32450189-32450190 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
11 | rs77871181 | chr6:32450193-32450194 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
12 | rs113653545 | chr6:32450203-32450204 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
13 | rs534555076 | chr6:32450211-32450212 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
14 | rs552840808 | chr6:32450230-32450231 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
15 | rs9269212 | chr6:32450249-32450250 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
16 | rs9269213 | chr6:32450250-32450251 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
17 | rs373688012 | chr6:32450257-32450258 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
18 | rs551392838 | chr6:32450271-32450272 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
19 | rs9269214 | chr6:32450272-32450273 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | mRNA abundance |
20 | rs556704361 | chr6:32450273-32450274 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
21 | rs575264978 | chr6:32450276-32450277 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
22 | rs377693490 | chr6:32450278-32450279 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
23 | rs576817083 | chr6:32450286-32450287 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
24 | rs9269216 | chr6:32450291-32450292 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
25 | rs115154852 | chr6:32450297-32450298 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
26 | rs113788503 | chr6:32450304-32450305 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
27 | rs9269217 | chr6:32450308-32450309 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
28 | rs9269218 | chr6:32450314-32450315 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
29 | rs9501641 | chr6:32450319-32450320 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
30 | rs9269219 | chr6:32450333-32450334 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
31 | rs9501642 | chr6:32450343-32450344 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
32 | rs200152662 | chr6:32450354-32450355 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
33 | rs3998189 | chr6:32450357-32450358 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
34 | rs9269222 | chr6:32450378-32450379 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | mRNA abundance |
35 | rs536448285 | chr6:32450379-32450380 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
36 | rs386699381 | chr6:32450385-32450386 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
37 | rs73729300 | chr6:32450391-32450392 | Weak transcription Enhancers Active TSS Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
38 | rs115529904 | chr6:32450404-32450405 | Weak transcription Enhancers Active TSS | n/a | n/a | Overlapped CNVs | n/a |
39 | rs369981736 | chr6:32450405-32450406 | Weak transcription Enhancers Active TSS | n/a | n/a | Overlapped CNVs | n/a |
40 | rs184679616 | chr6:32450445-32450446 | Weak transcription Enhancers Active TSS | n/a | n/a | Overlapped CNVs | n/a |
41 | rs34074553 | chr6:32450452-32450453 | Weak transcription Enhancers Active TSS | n/a | n/a | Overlapped CNVs | mRNA abundance |
42 | rs373340133 | chr6:32450453-32450454 | Weak transcription Enhancers Active TSS | n/a | n/a | Overlapped CNVs | n/a |
43 | rs112442055 | chr6:32450461-32450462 | Weak transcription Enhancers Active TSS | n/a | n/a | Overlapped CNVs | n/a |
44 | rs113993648 | chr6:32450462-32450463 | Weak transcription Enhancers Active TSS | n/a | n/a | Overlapped CNVs | n/a |
45 | rs571719935 | chr6:32450465-32450466 | Weak transcription Enhancers Active TSS | n/a | n/a | Overlapped CNVs | n/a |
46 | rs9269223 | chr6:32450475-32450476 | Weak transcription Enhancers Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
47 | rs9269224 | chr6:32450478-32450479 | Weak transcription Enhancers Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
48 | rs9269225 | chr6:32450489-32450490 | Weak transcription Enhancers Active TSS | n/a | n/a | Overlapped CNVs | n/a |
49 | rs9269226 | chr6:32450497-32450498 | Weak transcription Enhancers Active TSS | n/a | n/a | Overlapped CNVs | n/a |
50 | rs9269227 | chr6:32450515-32450516 | Weak transcription Enhancers Active TSS | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Follicular lymphoma | 20505157 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Leukemia | 21518781 | CNVD |
Cancer | 21637783 | CNVD |
Facial dysmorphism | 22105932 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Diffuse large b-cell lymphoma | 18287131 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Breast cancer | 21264507 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Cancer | 16751803 | CNVD |
Bladder cancer | 19088036 | CNVD |
Wilms tumour | 21544195 | CNVD |
Uveal melanoma | 21693616 | CNVD |
Biliary cancer | 19435499 | CNVD |
Malaria | 21533027 | CNVD |
Retinoblastoma | 19183342 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Prostate cancer | 18632612 | CNVD |
Breast cancer | 21858162 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Lung cancer | 18438408 | CNVD |
Autism | 21448237 | CNVD |
Melanoma | 18172304 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Breast cancer | 22844521 | CNVD |
Gestational infection | 22844521 | CNVD |
HIV/AIDS | 22844521 | CNVD |
Head circumference | 22844521 | CNVD |
Infertility | 22844521 | CNVD |
Ovarian cancer | 22844521 | CNVD |
Prostate cancer | 22844521 | CNVD |
Psoriasis | 22844521 | CNVD |
Recurrent birth weight diabetes | 22844521 | CNVD |
Rheumatoid arthritis | 22844521 | CNVD |
Sclerosis systemic | 22844521 | CNVD |
Systemic lupus erythematosus | 22844521 | CNVD |
Obesity | 22844521 | CNVD |
Recurrent pregnancy loss | 22844521 | CNVD |
Intellectual disability | 21811512 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Congenital anomalies of the kidney and urinary tract | 18694510 | CNVD |
Nasopharyngeal cancer | 22815911 | CNVD |
Ovarian cancer | 21781307 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Basal cell lymphoma | 21115979 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Autism | 22495311 | CNVD |
Cancer | 16790693 | CNVD |
Cervical cancer | 21062161 | CNVD |
Esophageal adenocarcinoma | 18820669 | CNVD |
Systemic lupus erythematosus | 17503323 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Urothelial carcinoma | 18382360 | CNVD |
Cancer | 21183584 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Renal cell carcinoma | 18765545 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Gastric cancer | 17908304 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Schizophrenia | 19571808 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Neuroblastoma | 16790693 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
abnormal development | 18461090 | CNVD |
Breast cancer | 16397240 | CNVD |
Retinoblastoma | 22278416 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Systemic lupus erythematosus | 20877625 | CNVD |
Cleidocranial dysplasia | 18696259 | CNVD |
Holoprosencephaly | 21359414 | CNVD |
Liposarcoma | 21253554 | CNVD |
Uveal melanoma | 20484589 | CNVD |
Fibroblasts | 20926602 | CNVD |
Systemic lupus erythematosus | 19279649 | CNVD |
Retinoblastoma | 16790693 | CNVD |
Acute myocardial infarction | 18032375 | CNVD |
Renal cell carcinoma | 19150565 | CNVD |
Systemic lupus erythematosus | 19591781 | CNVD |
Attention deficit hyperactivity disorder | 19287146 | CNVD |
Autism | 19287146 | CNVD |
Erythema nodosum in leprosy | 19287146 | CNVD |
Henoch-schoenlein purpura | 19287146 | CNVD |
Liver cirrhosis | 19287146 | CNVD |
Systemic lupus erythematosus | 19287146 | CNVD |
Autoimmune disease | 19135723 | CNVD |
Congenital adrenal hyperplasia | 18478071 | CNVD |
Systemic lupus erythematosus | 19287147 | CNVD |
Osteosarcoma | 16790693 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Biliary cancer | 20360734 | CNVD |
Breast cancer | 20360734 | CNVD |
Coronary artery disease | 20360734 | CNVD |
Crohn''s disease | 20360734 | CNVD |
Hypertension | 20360734 | CNVD |
Rheumatoid arthritis | 20360734 | CNVD |
Type 1 diabetes | 20360734 | CNVD |
Type 2 diabetes | 20360734 | CNVD |
Cancer | 22183965 | CNVD |
Melanoma | 22183965 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Incontinentia Pigmenti | 22033527 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Encephalopathy | 20692195 | CNVD |
Immune disease | 17576883 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Breast cancer | 22522925 | CNVD |
Rheumatoid arthritis | 22536334 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Non-syndromic sensorineural hearing loss | 17289997 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Oral cancer | 21386901 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:32447200-32452000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr6:32449800-32450200 | Enhancers | GM12878-XiMat | blood |
3 | chr6:32449800-32451000 | Enhancers | Primary monocytes fromperipheralblood | blood |
4 | chr6:32450000-32450200 | Flanking Active TSS | Primary B cells from peripheral blood | blood |
5 | chr6:32450000-32450400 | Flanking Active TSS | Monocytes-CD14+_RO01746 | blood |
6 | chr6:32450000-32450600 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
7 | chr6:32450200-32450600 | Active TSS | Primary B cells from peripheral blood | blood |
8 | chr6:32450600-32450800 | Flanking Active TSS | Primary B cells from peripheral blood | blood |
9 | chr6:32450800-32451200 | Enhancers | Primary B cells from peripheral blood | blood |
10 | chr6:32451200-32452200 | Weak transcription | Primary B cells from peripheral blood | blood |
11 | chr6:32452000-32452200 | Enhancers | ES-WA7 Cell Line | embryonic stem cell |
12 | chr6:32452000-32452600 | Genic enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
13 | chr6:32452000-32452600 | Enhancers | Spleen | Spleen |
14 | chr6:32452200-32452600 | Bivalent Enhancer | H1 Derived Mesenchymal Stem Cells | ES cell derived |
15 | chr6:32452400-32452600 | Enhancers | Primary B cells from peripheral blood | blood |
16 | chr6:32452400-32452600 | Bivalent Enhancer | Esophagus | oesophagus |
17 | chr6:32452600-32452800 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
18 | chr6:32452600-32453000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
19 | chr6:32453200-32453400 | Enhancers | NHEK | skin |
20 | chr6:32453400-32453600 | Enhancers | Esophagus | oesophagus |
21 | chr6:32455800-32456200 | Enhancers | Ganglion Eminence derived primary cultured neurospheres | brain |
22 | chr6:32457400-32457600 | Enhancers | Monocytes-CD14+_RO01746 | blood |
23 | chr6:32458200-32458400 | Enhancers | Monocytes-CD14+_RO01746 | blood |
24 | chr6:32468800-32469200 | Enhancers | Brain Anterior Caudate | brain |
25 | chr6:32468800-32469200 | Enhancers | Fetal Stomach | stomach |
26 | chr6:32468800-32469400 | Enhancers | Primary T helper cells PMA-I stimulated | -- |
27 | chr6:32479600-32479800 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
28 | chr6:32479800-32486000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
29 | chr6:32480600-32485200 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
30 | chr6:32480600-32487200 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
31 | chr6:32483800-32486600 | Weak transcription | Adipose Nuclei | Adipose |
32 | chr6:32484000-32496600 | Weak transcription | Primary T regulatory cells fromperipheralblood | blood |
33 | chr6:32484200-32485600 | Weak transcription | Primary B cells from peripheral blood | blood |
34 | chr6:32484200-32485800 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
35 | chr6:32484400-32486800 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
36 | chr6:32484600-32486800 | Weak transcription | Primary monocytes fromperipheralblood | blood |
37 | chr6:32485000-32486600 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
38 | chr6:32485200-32485800 | Strong transcription | Rectal Mucosa Donor 29 | rectum |
39 | chr6:32485400-32485800 | Enhancers | Fetal Kidney | kidney |
40 | chr6:32485400-32489200 | Weak transcription | Primary Natural Killer cells fromperipheralblood | blood |
41 | chr6:32485400-32490600 | Weak transcription | Primary B cells from cord blood | blood |
42 | chr6:32485400-32496600 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
43 | chr6:32485600-32486000 | Strong transcription | Primary B cells from peripheral blood | blood |
44 | chr6:32485600-32486400 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
45 | chr6:32485600-32491200 | Weak transcription | GM12878-XiMat | blood |
46 | chr6:32485800-32488600 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
47 | chr6:32485800-32490800 | Strong transcription | Monocytes-CD14+_RO01746 | blood |
48 | chr6:32486000-32488200 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
49 | chr6:32486000-32489600 | Genic enhancers | Primary B cells from peripheral blood | blood |
50 | chr6:32486400-32489400 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |