Variant report

Variant	esv2830172
Chromosome Location	chr6:141079124-141364472
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1457)
CpG islands
(count:244)
Chromatin interactive
region (count:47)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1457 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:141219526-141219833	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:141263537-141263547	K562	blood:	n/a	n/a
3	ARID3A	chr6:141347701-141348052	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:141233801-141234207	HepG2	liver:	n/a	n/a
5	ARID3A	chr6:141219654-141219754	K562	blood:	n/a	n/a
6	ATF1	chr6:141242769-141243022	K562	blood:	n/a	n/a
7	ATF1	chr6:141236361-141236561	K562	blood:	n/a	n/a
8	ATF1	chr6:141218607-141218807	K562	blood:	n/a	n/a
9	ATF1	chr6:141095400-141095672	K562	blood:	n/a	n/a
10	ATF1	chr6:141178980-141179277	K562	blood:	n/a	n/a
11	ATF2	chr6:141095239-141095755	GM12878	blood:	n/a	n/a
12	ATF2	chr6:141130615-141131385	GM12878	blood:	n/a	n/a
13	ATF2	chr6:141095241-141095760	GM12878	blood:	n/a	n/a
14	ATF2	chr6:141130657-141131259	GM12878	blood:	n/a	n/a
15	BATF	chr6:141095289-141095760	GM12878	blood:	n/a	chr6:141095560-141095570 chr6:141095559-141095570
16	BATF	chr6:141130703-141131094	GM12878	blood:	n/a	n/a
17	BATF	chr6:141095303-141095730	GM12878	blood:	n/a	chr6:141095560-141095570 chr6:141095559-141095570
18	BATF	chr6:141130673-141131290	GM12878	blood:	n/a	n/a
19	BATF	chr6:141179510-141179919	GM12878	blood:	n/a	n/a
20	BCL11A	chr6:141130716-141131254	GM12878	blood:	n/a	n/a
21	BCL11A	chr6:141095314-141095662	GM12878	blood:	n/a	chr6:141095559-141095568 chr6:141095558-141095567
22	BCL11A	chr6:141130675-141131273	GM12878	blood:	n/a	n/a
23	BCL11A	chr6:141095345-141095639	GM12878	blood:	n/a	chr6:141095559-141095568 chr6:141095558-141095567
24	BCL11A	chr6:141079725-141079897	GM12878	blood:	n/a	n/a
25	BCL3	chr6:141130776-141131187	GM12878	blood:	n/a	n/a
26	BCL3	chr6:141095338-141095693	GM12878	blood:	n/a	chr6:141095559-141095568 chr6:141095558-141095567
27	BCLAF1	chr6:141130632-141131257	GM12878	blood:	n/a	n/a
28	BCLAF1	chr6:141095199-141095818	GM12878	blood:	n/a	chr6:141095559-141095568 chr6:141095558-141095567
29	BHLHE40	chr6:141347764-141348000	HepG2	liver:	n/a	n/a
30	BHLHE40	chr6:141219396-141219402	K562	blood:	n/a	n/a
31	BHLHE40	chr6:141179621-141179991	K562	blood:	n/a	n/a
32	BHLHE40	chr6:141218694-141218754	K562	blood:	n/a	n/a
33	BHLHE40	chr6:141178965-141179291	K562	blood:	n/a	n/a
34	BHLHE40	chr6:141233841-141234246	HepG2	liver:	n/a	n/a
35	BRCA1	chr6:141236422-141236424	HepG2	liver:	n/a	n/a
36	CBX3	chr6:141095286-141095712	HCT-116	colon:	n/a	n/a
37	CBX3	chr6:141089349-141089584	K562	blood:	n/a	n/a
38	CBX3	chr6:141265879-141266203	K562	blood:	n/a	n/a
39	CBX3	chr6:141265947-141266292	HCT-116	colon:	n/a	n/a
40	CCNT2	chr6:141281282-141281459	K562	blood:	n/a	n/a
41	CEBPB	chr6:141233883-141234267	HepG2	liver:	n/a	chr6:141234069-141234082 chr6:141234070-141234081
42	CEBPB	chr6:141338270-141338547	MCF-7	breast:	n/a	chr6:141338466-141338477
43	CEBPB	chr6:141201024-141201417	A549	lung:	n/a	chr6:141201226-141201237
44	CEBPB	chr6:141125414-141125719	HepG2	liver:	n/a	chr6:141125574-141125583 chr6:141125574-141125585 chr6:141125572-141125583
45	CEBPB	chr6:141338321-141338639	Hela-S3	cervix:	n/a	chr6:141338466-141338477
46	CEBPB	chr6:141078984-141079681	IMR90	lung:	n/a	chr6:141079494-141079505
47	CEBPB	chr6:141333993-141334316	IMR90	lung:	n/a	chr6:141334163-141334174
48	CEBPB	chr6:141178787-141179735	IMR90	lung:	n/a	chr6:141179299-141179310 chr6:141178917-141178930 chr6:141179300-141179311 chr6:141179299-141179312 chr6:141179299-141179312 chr6:141179299-141179310 chr6:141179357-141179368
49	CEBPB	chr6:141200929-141201437	A549	lung:	n/a	chr6:141201226-141201237
50	CEBPB	chr6:141140936-141141171	K562	blood:	n/a	chr6:141141070-141141083 chr6:141141070-141141083 chr6:141141071-141141082

(count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:141335463-141335513	SK-N-SH	brain:	n/a
2	chr6:141301409-141301459	NHDF-neo	bronchial:	n/a
3	chr6:141301409-141301459	HL-60	blood:	n/a
4	chr6:141335463-141335513	BJ	skin:	n/a
5	chr6:141335463-141335513	SK-N-MC	brain:	n/a
6	chr6:141301409-141301459	CMK	blood:	n/a
7	chr6:141335831-141335881	AoSMC	blood vessel:	n/a
8	chr6:141335831-141335881	HIPEpiC	eye:	n/a
9	chr6:141301409-141301459	PrEC	prostate:	n/a
10	chr6:141335463-141335513	U87	brain:	n/a
11	chr6:141335463-141335513	SKMC	muscle:	n/a
12	chr6:141301409-141301459	SK-N-SH	brain:	n/a
13	chr6:141167819-141167869	SKMC	muscle:	n/a
14	chr6:141301409-141301459	HCPEpiC	choroid plexus:	n/a
15	chr6:141167819-141167869	GM12878	blood:	n/a
16	chr6:141167819-141167869	HEEpiC	esophagus:	n/a
17	chr6:141167819-141167869	HAEpiC	amniotic membrane:	n/a
18	chr6:141335831-141335881	HRE	kidney:	n/a
19	chr6:141301409-141301459	GM12891	blood:	n/a
20	chr6:141335463-141335513	GM12878	blood:	n/a
21	chr6:141301409-141301459	HCM	heart:	n/a
22	chr6:141301409-141301459	HNPCEpiC	eye:	n/a
23	chr6:141335463-141335513	IMR90	lung:	fetal
24	chr6:141167819-141167869	Caco-2	colon:	n/a
25	chr6:141335831-141335881	SK-N-MC	brain:	n/a
26	chr6:141335463-141335513	ovcar-3	ovarian:	n/a
27	chr6:141167819-141167869	GM12891	blood:	n/a
28	chr6:141335463-141335513	H1-hESC	embryonic stem cell:	embryo
29	chr6:141335831-141335881	HCPEpiC	choroid plexus:	n/a
30	chr6:141335463-141335513	HPAEpiC	pulmonary alveolar:	n/a
31	chr6:141167819-141167869	MCF10A-Er-Src	breast:	n/a
32	chr6:141301409-141301459	BE2_C	brain:	n/a
33	chr6:141301409-141301459	RPTEC	kidney:	n/a
34	chr6:141301409-141301459	HRCEpiC	kidney:	n/a
35	chr6:141301409-141301459	GM12892	blood:	n/a
36	chr6:141167819-141167869	AG04449	skin:	fetal
37	chr6:141301409-141301459	H1-hESC	embryonic stem cell:	embryo
38	chr6:141301409-141301459	Caco-2	colon:	n/a
39	chr6:141301409-141301459	SAEC	small airway:	n/a
40	chr6:141335831-141335881	AG09309	skin:	n/a
41	chr6:141335831-141335881	HAEpiC	amniotic membrane:	n/a
42	chr6:141301409-141301459	HPAEpiC	pulmonary alveolar:	n/a
43	chr6:141335463-141335513	Jurkat	blood:	n/a
44	chr6:141167819-141167869	SK-N-SH	brain:	n/a
45	chr6:141167819-141167869	BE2_C	brain:	n/a
46	chr6:141335831-141335881	LNCaP	prostate:	n/a
47	chr6:141335831-141335881	Jurkat	blood:	n/a
48	chr6:141335463-141335513	SK-N-SH_RA	brain:	n/a
49	chr6:141335463-141335513	AG10803	skin:	n/a
50	chr6:141301409-141301459	AG04449	skin:	fetal

(count:47 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:141204507..141206612-chr6:141209189..141212114,2	K562	blood:
2	chr2:225923916..225924696-chr6:141138966..141139702,2	MCF-7	breast:
3	chr6:140202949..140203456-chr6:141242488..141243293,2	MCF-7	breast:
4	chr6:141147468..141149344-chr6:141153230..141155525,2	K562	blood:
5	chr6:141186030..141188645-chr6:141209021..141211970,2	K562	blood:
6	chr6:141356659..141359545-chr6:141368726..141370733,2	K562	blood:
7	chr6:141201313..141204931-chr6:141205813..141208687,3	K562	blood:
8	chr6:141209671..141212646-chr6:141217346..141220652,3	K562	blood:
9	chr6:141204507..141206612-chr6:141209189..141212114,2	K562	blood:
10	chr6:141069422..141072199-chr6:141082873..141085142,2	K562	blood:
11	chr6:141209671..141212646-chr6:141217346..141220652,3	K562	blood:
12	chr6:141142470..141143996-chr6:141149245..141150819,2	K562	blood:
13	chr6:141194790..141196921-chr6:141201066..141202633,2	K562	blood:
14	chr6:141142470..141143996-chr6:141149245..141150819,2	K562	blood:
15	chr6:141231506..141233804-chr6:141236593..141238127,2	K562	blood:
16	chr6:141186030..141188645-chr6:141209021..141211970,2	K562	blood:
17	chr6:141225214..141229759-chr6:141230098..141233300,4	K562	blood:
18	chr6:141203363..141207943-chr6:141209189..141214513,5	K562	blood:
19	chr6:141210884..141213823-chr6:141384643..141387034,2	K562	blood:
20	chr6:141324954..141326818-chr6:141329009..141331828,2	K562	blood:
21	chr6:141328979..141331399-chr6:141334184..141335963,2	K562	blood:
22	chr5:98131550..98132070-chr6:141289515..141290035,2	MCF-7	breast:
23	chr6:140128805..140131673-chr6:141152750..141154839,2	K562	blood:
24	chr6:141194790..141196921-chr6:141201066..141202633,2	K562	blood:
25	chr6:141231506..141233804-chr6:141236593..141238127,2	K562	blood:
26	chr6:141218727..141221164-chr6:141224854..141227033,2	K562	blood:
27	chr6:141212782..141215020-chr6:141216248..141219853,3	K562	blood:
28	chr6:141212782..141215020-chr6:141216248..141219853,3	K562	blood:
29	chr6:141201313..141204931-chr6:141205813..141208687,3	K562	blood:
30	chr6:141203363..141207943-chr6:141209189..141214513,5	K562	blood:
31	chr6:141324954..141326818-chr6:141329009..141331828,2	K562	blood:
32	chr6:141245976..141248049-chr6:141253125..141254687,2	MCF-7	breast:
33	chr6:141314907..141317721-chr6:141319915..141321447,2	K562	blood:
34	chr6:141220439..141223347-chr6:141228844..141230950,2	MCF-7	breast:
35	chr6:141220439..141223347-chr6:141228844..141230950,2	MCF-7	breast:
36	chr6:141147468..141149344-chr6:141153230..141155525,2	K562	blood:
37	chr6:141218727..141221164-chr6:141224854..141227033,2	K562	blood:
38	chr6:141314907..141317721-chr6:141319915..141321447,2	K562	blood:
39	chr6:141328979..141331399-chr6:141334184..141335963,2	K562	blood:
40	chr6:141194692..141196921-chr6:141200242..141202633,2	K562	blood:
41	chr6:141194692..141196921-chr6:141200242..141202633,2	K562	blood:
42	chr6:141212244..141214629-chr6:141219189..141220964,2	MCF-7	breast:
43	chr6:141212244..141214629-chr6:141219189..141220964,2	MCF-7	breast:
44	chr6:141225214..141229759-chr6:141230098..141233300,4	K562	blood:
45	chr6:141201035..141203602-chr6:141204106..141206324,2	MCF-7	breast:
46	chr6:141201035..141203602-chr6:141204106..141206324,2	MCF-7	breast:
47	chr6:141245976..141248049-chr6:141253125..141254687,2	MCF-7	breast:

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NMBR-2	chr6:141137269-141138214	NONHSAT115288
2	lnc-NMBR-2	chr6:141219325-141219567	NONHSAT115288
3	lnc-NMBR-2	chr6:141167095-141167471	NONHSAT115288
4	lnc-NMBR-2	chr6:141167095-141167441	ENSG00000234147
5	lnc-NMBR-2	chr6:141173956-141174061	ENSG00000234147
6	lnc-NMBR-8	chr6:141208788-141209134	NONHSAT115290
7	lnc-NMBR-2	chr6:141173956-141174059	NONHSAT115288
8	lnc-NMBR-2	chr6:141216940-141217067	NONHSAT115288
9	lnc-NMBR-2	chr6:141128740-141128958	NONHSAT115288
10	lnc-NMBR-2	chr6:141184950-141184976	NONHSAT115288
11	lnc-GJE1-8	chr6:141082666-141083399	NONHSAT115287
12	lnc-NMBR-2	chr6:141184986-141185033	NONHSAT115288
13	lnc-NMBR-8	chr6:141215649-141215754	NONHSAT115290
14	lnc-NMBR-2	chr6:141185039-141185580	NONHSAT115288

No data

Variant related genes	Relation type
RPS3AP24	TF binding region
ENSG00000234147	TF binding region
ENSG00000216548	TF binding region
RPS3AP24	CpG island
ENSG00000234147	CpG island
ENSG00000216548	CpG island

Extended variants
information (count: 7767 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:7767 , 50 per page) page: 1 2 3 4 5 6 7 ... 156

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1568482	chr6:141079124-141079125	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs531222533	chr6:141079137-141079138	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs78767125	chr6:141079184-141079185	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs564483630	chr6:141079192-141079193	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs528447370	chr6:141079208-141079209	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs78049384	chr6:141079282-141079283	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs568246928	chr6:141079303-141079304	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs561997968	chr6:141079346-141079347	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs139797013	chr6:141079402-141079403	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs547975100	chr6:141079419-141079420	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs569553211	chr6:141079437-141079438	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs9495821	chr6:141079534-141079535	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs552162813	chr6:141079588-141079589	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs66891150	chr6:141079653-141079654	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs77042384	chr6:141079657-141079658	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs386706441	chr6:141079658-141079659	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs66995966	chr6:141079659-141079660	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs570323961	chr6:141079671-141079672	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs535584731	chr6:141079672-141079673	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs35617294	chr6:141079692-141079693	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs141546423	chr6:141079724-141079725	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs185413085	chr6:141079732-141079733	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs116923994	chr6:141079947-141079948	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs117983150	chr6:141079950-141079951	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs372738055	chr6:141079968-141079969	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs146192475	chr6:141079972-141079973	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs139176363	chr6:141079998-141079999	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs562157682	chr6:141080027-141080028	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs529334956	chr6:141080042-141080043	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs142588323	chr6:141080077-141080078	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs188232770	chr6:141080080-141080081	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs530588392	chr6:141080095-141080096	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs552360692	chr6:141080097-141080098	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs541808337	chr6:141080152-141080153	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs570608803	chr6:141080181-141080182	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs534966278	chr6:141080294-141080295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs374939381	chr6:141080336-141080337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs180937194	chr6:141080368-141080369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs371211598	chr6:141080385-141080386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs9495823	chr6:141080389-141080390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs568097236	chr6:141080461-141080462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs535521083	chr6:141080463-141080464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs183575116	chr6:141080534-141080535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs368358476	chr6:141080548-141080549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs375727868	chr6:141080587-141080588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs151297873	chr6:141080623-141080624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs555595626	chr6:141080642-141080643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs35514781	chr6:141080711-141080712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs575846925	chr6:141080761-141080762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs373855187	chr6:141080815-141080816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Gastric cancer	17908304	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Follicular lymphoma	18703704	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Breast cancer	21364760	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute monocytic leukemia	16498392	CNVD
Endocrine pancreatic tumor	17914106	CNVD
Soft tissue tumor	16732325	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
craniofacial dysmorphism	21918468	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:829 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141066800-141088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:141079600-141080200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:141080600-141089200	Weak transcription	Placenta	Placenta
4	chr6:141081600-141083600	Weak transcription	Fetal Heart	heart
5	chr6:141083600-141083800	Enhancers	Fetal Heart	heart
6	chr6:141087800-141088600	Enhancers	HMEC	breast
7	chr6:141088200-141088600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:141088200-141088600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:141088600-141089200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:141089200-141089600	ZNF genes & repeats	Placenta	Placenta
11	chr6:141089200-141090000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:141089600-141121800	Weak transcription	Placenta	Placenta
13	chr6:141090000-141092200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:141092000-141092200	ZNF genes & repeats	Fetal Heart	heart
15	chr6:141092200-141093400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:141092800-141094000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:141093000-141093400	ZNF genes & repeats	Fetal Heart	heart
18	chr6:141093200-141093400	ZNF genes & repeats	Left Ventricle	heart
19	chr6:141093400-141093800	Weak transcription	Fetal Heart	heart
20	chr6:141093400-141094600	Weak transcription	Left Ventricle	heart
21	chr6:141093400-141094800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:141093800-141096600	Enhancers	Fetal Heart	heart
23	chr6:141094000-141095200	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr6:141094200-141096000	Enhancers	HUVEC	blood vessel
25	chr6:141094400-141095200	Enhancers	Osteobl	bone
26	chr6:141094400-141096000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:141094600-141095200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:141094600-141095200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:141094600-141095400	Enhancers	Right Ventricle	heart
30	chr6:141094600-141095600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:141094600-141095600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:141094600-141096000	Enhancers	HMEC	breast
33	chr6:141094600-141096000	Enhancers	NH-A	brain
34	chr6:141094600-141096000	Enhancers	NHEK	skin
35	chr6:141094600-141096400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:141094600-141096800	Enhancers	Fetal Intestine Small	intestine
37	chr6:141094800-141095200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr6:141094800-141095200	Enhancers	GM12878-XiMat	blood
39	chr6:141094800-141096000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:141094800-141096000	Enhancers	HSMM	muscle
41	chr6:141094800-141096000	Enhancers	NHDF-Ad	bronchial
42	chr6:141095000-141095200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:141095000-141095200	Enhancers	HSMMtube	muscle
44	chr6:141095000-141095400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:141095000-141096000	Enhancers	Placenta Amnion	Placenta Amnion
46	chr6:141095000-141096800	Enhancers	Fetal Intestine Large	intestine
47	chr6:141095200-141095400	Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr6:141095200-141095600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:141095200-141095600	Enhancers	Fetal Muscle Leg	muscle
50	chr6:141095200-141095600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links