Variant report

Variant	esv3105
Chromosome Location	chr10:42533086-42538986
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1304 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:1304 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201461640	chr10:42533086-42533087	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs367906713	chr10:42533088-42533089	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs370248042	chr10:42533092-42533093	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs78990568	chr10:42533098-42533099	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs562082353	chr10:42533099-42533100	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs575536963	chr10:42533102-42533103	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs12765001	chr10:42533103-42533104	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs544723747	chr10:42533104-42533105	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs71476307	chr10:42533105-42533106	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs76292850	chr10:42533106-42533107	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs537716862	chr10:42533107-42533108	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs76501875	chr10:42533109-42533110	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs77056205	chr10:42533110-42533111	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs374140844	chr10:42533111-42533112	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs79402940	chr10:42533112-42533113	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs80289590	chr10:42533114-42533115	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs75383254	chr10:42533115-42533116	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs368678371	chr10:42533117-42533118	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs371806884	chr10:42533121-42533122	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs372978318	chr10:42533123-42533124	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs553493655	chr10:42533125-42533126	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs533608026	chr10:42533128-42533129	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs562082834	chr10:42533129-42533130	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs530824224	chr10:42533131-42533132	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs377228724	chr10:42533132-42533133	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs78368257	chr10:42533135-42533136	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs368370843	chr10:42533138-42533139	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs12773734	chr10:42533139-42533140	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs564088254	chr10:42533140-42533141	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs547175335	chr10:42533143-42533144	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs12773736	chr10:42533144-42533145	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs113710677	chr10:42533148-42533149	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs372314428	chr10:42533150-42533151	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs528954990	chr10:42533152-42533153	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs375327246	chr10:42533153-42533154	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs369354693	chr10:42533154-42533155	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs372614069	chr10:42533155-42533156	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs375968966	chr10:42533158-42533159	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs200789145	chr10:42533159-42533160	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs75190140	chr10:42533161-42533162	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs200234905	chr10:42533163-42533164	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs74400253	chr10:42533164-42533165	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs76300361	chr10:42533165-42533166	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs549394526	chr10:42533168-42533169	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs537473334	chr10:42533171-42533172	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs61845449	chr10:42533177-42533178	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs557629629	chr10:42533181-42533182	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs571201853	chr10:42533183-42533184	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs540146308	chr10:42533193-42533194	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs553557078	chr10:42533198-42533199	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:309 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42525400-42533200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr10:42525800-42533600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr10:42527000-42533200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
4	chr10:42527000-42533200	ZNF genes & repeats	Primary T cells from cord blood	blood
5	chr10:42527000-42533200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:42527000-42533600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:42527200-42533400	ZNF genes & repeats	Psoas Muscle	Psoas
8	chr10:42527200-42533600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr10:42528800-42533200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr10:42529200-42533600	ZNF genes & repeats	Small Intestine	intestine
11	chr10:42530800-42533600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr10:42531800-42533400	ZNF genes & repeats	HepG2	liver
13	chr10:42532800-42534600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr10:42532800-42534600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:42532800-42534600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:42532800-42534600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr10:42532800-42534600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:42532800-42534600	Weak transcription	Brain Angular Gyrus	brain
19	chr10:42532800-42534600	Weak transcription	Esophagus	oesophagus
20	chr10:42532800-42534600	Weak transcription	Fetal Kidney	kidney
21	chr10:42532800-42534600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr10:42532800-42534600	Weak transcription	Right Ventricle	heart
23	chr10:42532800-42534600	Weak transcription	Thymus	Thymus
24	chr10:42532800-42534600	Weak transcription	Spleen	Spleen
25	chr10:42532800-42534600	Weak transcription	GM12878-XiMat	blood
26	chr10:42532800-42534600	Weak transcription	NHEK	skin
27	chr10:42532800-42534600	Weak transcription	Osteobl	bone
28	chr10:42533000-42534600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr10:42533000-42534600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr10:42533000-42534600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr10:42533000-42534600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:42533000-42534600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr10:42533000-42534600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:42533000-42534600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:42533000-42534600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:42533000-42534600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:42533000-42534600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr10:42533000-42534600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:42533000-42534600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:42533000-42534600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:42533000-42534600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:42533000-42534600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:42533000-42534600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr10:42533000-42534600	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr10:42533000-42534600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr10:42533000-42534600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr10:42533000-42534600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr10:42533000-42534600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr10:42533000-42534600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr10:42533000-42534600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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