Variant report
Variant | esv32754 |
---|---|
Chromosome Location | chr7:106723808-106728719 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:13)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:13 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | CEBPB | chr7:106726238-106726506 | A549 | lung: | n/a | chr7:106726358-106726369 |
2 | CEBPB | chr7:106726234-106726462 | HepG2 | liver: | n/a | chr7:106726358-106726369 |
3 | CEBPB | chr7:106726271-106726497 | K562 | blood: | n/a | chr7:106726358-106726369 |
4 | GATA2 | chr7:106728538-106728894 | SH-SY5Y | brain: | n/a | n/a |
5 | GATA3 | chr7:106728526-106728795 | SH-SY5Y | brain: | n/a | n/a |
6 | IRF1 | chr7:106728135-106728330 | K562 | blood: | n/a | chr7:106728203-106728217 chr7:106728199-106728213 |
7 | JUN | chr7:106725655-106725928 | HepG2 | liver: | n/a | chr7:106725791-106725804 |
8 | JUND | chr7:106725660-106725898 | HepG2 | liver: | n/a | n/a |
9 | MAFK | chr7:106726470-106726643 | HepG2 | liver: | n/a | n/a |
10 | POLR2A | chr7:106727005-106727065 | MCF-7 | breast: | n/a | n/a |
11 | POLR2A | chr7:106727020-106727135 | A549 | lung: | n/a | n/a |
12 | RFX5 | chr7:106727594-106727595 | K562 | blood: | n/a | n/a |
13 | TCF7L2 | chr7:106727024-106727198 | Hela-S3 | cervix: | n/a | n/a |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
PRKAR2B | TF binding region |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs183797873 | chr7:106723821-106723822 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs11764389 | chr7:106723878-106723879 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
3 | rs117909394 | chr7:106723885-106723886 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs570653472 | chr7:106723922-106723923 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs2707374 | chr7:106723926-106723927 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
6 | rs367821396 | chr7:106723947-106723948 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs529233558 | chr7:106724034-106724035 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs551330382 | chr7:106724193-106724194 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs564746497 | chr7:106724289-106724290 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs533410091 | chr7:106724307-106724308 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs187981618 | chr7:106724331-106724332 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs148739705 | chr7:106724354-106724355 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs546406218 | chr7:106724550-106724551 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs79092883 | chr7:106724559-106724560 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs549036196 | chr7:106724572-106724573 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs567927394 | chr7:106724622-106724623 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs536830147 | chr7:106724645-106724646 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs556884859 | chr7:106724697-106724698 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs28418724 | chr7:106724713-106724714 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs34714608 | chr7:106724725-106724726 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs577056068 | chr7:106724800-106724801 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs3839823 | chr7:106724813-106724814 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs539681641 | chr7:106724881-106724882 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs552698362 | chr7:106724901-106724902 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs376904647 | chr7:106724902-106724903 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs541964290 | chr7:106724936-106724937 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs561752053 | chr7:106725016-106725017 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs575936884 | chr7:106725067-106725068 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs79926882 | chr7:106725082-106725083 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs544815737 | chr7:106725128-106725129 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs564840279 | chr7:106725158-106725159 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs533466838 | chr7:106725167-106725168 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs547223138 | chr7:106725175-106725176 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs113475398 | chr7:106725180-106725181 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs113164310 | chr7:106725232-106725233 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs529213631 | chr7:106725272-106725273 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs549097674 | chr7:106725284-106725285 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs569008815 | chr7:106725291-106725292 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs182444461 | chr7:106725293-106725294 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs550374305 | chr7:106725317-106725318 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs570582142 | chr7:106725366-106725367 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs539374259 | chr7:106725402-106725403 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs553198379 | chr7:106725417-106725418 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs572785862 | chr7:106725423-106725424 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs535417824 | chr7:106725497-106725498 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs185433710 | chr7:106725516-106725517 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs80029934 | chr7:106725553-106725554 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs534790091 | chr7:106725668-106725669 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs564525475 | chr7:106725792-106725793 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs13311274 | chr7:106725830-106725831 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Disease | PMID | Source |
---|---|---|
Basal cell lymphoma | 17170743 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Seminomas | 18059402 | CNVD |
Testicular cancer | 18059402 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Autism | 19415332 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Malaria | 21533027 | CNVD |
Melanoma | 18172304 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
head and neck squamous cell carcinoma | 19289630 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Autism | 22495311 | CNVD |
Wilms tumour | 21544195 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Lissencephaly | 21572526 | CNVD |
Breast cancer | 17603634 | CNVD |
Liposarcoma | 21253554 | CNVD |
Breast cancer | 16397240 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Astrocytoma | 17387387 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Low-grade fibromyxoid sarcoma | 0 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Breast cancer | 21264507 | CNVD |
Shwachman-Diamond syndrome | 22934832 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Cutaneous malignant melanoma | 17690212 | CNVD |
Leukemia | 17361228 | CNVD |
Breast cancer | 16461572 | CNVD |
Peripheral t-cell lymphoma | 19118030 | CNVD |
Malignant melanoma | 17690212 | CNVD |
Renal cell carcinoma | 18592004 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Multiple myeloma | 17550852 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
abortions and stillbirths | 19751515 | CNVD |
Acute lymphoblastic leukemia | 21980252 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Lung cancer | 18438408 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Non-syndromic sensorineural hearing loss | 21987784 | CNVD |
Burkitt''s lymphoma | 19759907 | CNVD |
Malignant melanoma | 17260012 | CNVD |
Myelodysplastic syndrome | 21251322 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Breast cancer | 21785460 | CNVD |
Chronic myeloid leukemia | 21384125 | CNVD |
Breast cancer | 21858162 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
Autism | 19401682 | CNVD |
Neuroticism | 17667963 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Breast cancer | 21364760 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Prostate cancer | 16573809 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Melanoma | 17363583 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Acute lymphoblastic leukemia | 17443227 | CNVD |
Multiple myeloma | 16461302 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Cancer | 20164919 | CNVD |
Breast cancer | 22522925 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:106718000-106730600 | Weak transcription | Fetal Brain Female | brain |
2 | chr7:106718800-106727800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
3 | chr7:106719400-106730400 | Weak transcription | Fetal Brain Male | brain |
4 | chr7:106719400-106734200 | Weak transcription | Brain Anterior Caudate | brain |
5 | chr7:106719800-106730600 | Weak transcription | Brain Germinal Matrix | brain |
6 | chr7:106720200-106727000 | Weak transcription | Pancreas | Pancrea |
7 | chr7:106720800-106730600 | Weak transcription | Lung | lung |
8 | chr7:106720800-106730800 | Weak transcription | Fetal Stomach | stomach |
9 | chr7:106721000-106730200 | Weak transcription | Fetal Heart | heart |
10 | chr7:106721800-106730600 | Weak transcription | Brain Inferior Temporal Lobe | brain |
11 | chr7:106722600-106727800 | Weak transcription | K562 | blood |
12 | chr7:106725600-106730600 | Weak transcription | Spleen | Spleen |
13 | chr7:106727000-106727200 | ZNF genes & repeats | Pancreas | Pancrea |
14 | chr7:106727000-106727200 | Enhancers | Right Atrium | heart |
15 | chr7:106727200-106730400 | Weak transcription | Right Atrium | heart |
16 | chr7:106727600-106727800 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
17 | chr7:106727800-106729600 | Enhancers | K562 | blood |
18 | chr7:106727800-106730200 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
19 | chr7:106728000-106728800 | Enhancers | Right Ventricle | heart |
20 | chr7:106728400-106729000 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
21 | chr7:106728600-106728800 | Enhancers | Small Intestine | intestine |
22 | chr7:106728600-106729000 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |