Variant report

Variant	esv3302275
Chromosome Location	chr10:446352-451950
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:450799..453680-chr10:480575..483479,3	MCF-7	breast:
2	chr10:382961..385780-chr10:450030..452279,2	MCF-7	breast:
3	chr10:450870..453541-chr10:454338..458477,5	MCF-7	breast:

Extended variants
information (count: 344 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:344 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs570168127	chr10:446377-446378	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs146609097	chr10:446383-446384	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs149179505	chr10:446393-446394	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs143302793	chr10:446410-446411	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs140463856	chr10:446433-446434	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs540202989	chr10:446440-446441	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs188264211	chr10:446442-446443	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs7912411	chr10:446446-446447	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs59659849	chr10:446463-446464	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs138980268	chr10:446474-446475	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs575747353	chr10:446485-446486	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs541508602	chr10:446488-446489	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs370427908	chr10:446497-446498	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs527883444	chr10:446501-446502	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs201523609	chr10:446505-446506	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs547817199	chr10:446511-446512	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs564812238	chr10:446517-446518	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs373399758	chr10:446534-446535	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs533622402	chr10:446539-446540	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs55972703	chr10:446543-446544	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs570034494	chr10:446567-446568	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs113670846	chr10:446568-446569	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs540300945	chr10:446570-446571	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs535990911	chr10:446578-446579	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs146997473	chr10:446601-446602	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs568199968	chr10:446631-446632	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs182378264	chr10:446649-446650	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs186910446	chr10:446659-446660	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs191372998	chr10:446660-446661	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs552654147	chr10:446666-446667	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs576747400	chr10:446682-446683	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs539313487	chr10:446686-446687	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs185079231	chr10:446688-446689	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs138045465	chr10:446690-446691	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs541572032	chr10:446707-446708	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs190377536	chr10:446721-446722	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs564463707	chr10:446722-446723	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs149501050	chr10:446728-446729	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs370211914	chr10:446754-446755	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs572007163	chr10:446756-446757	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs541617702	chr10:446769-446770	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs374735491	chr10:446788-446789	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs533685445	chr10:446799-446800	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs550482525	chr10:446802-446803	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs563717159	chr10:446803-446804	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs193157938	chr10:446809-446810	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs113909393	chr10:446817-446818	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs529294059	chr10:446832-446833	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs549065292	chr10:446833-446834	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs367544901	chr10:446860-446861	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD

Chromatin state (count:187 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:395800-489400	Weak transcription	Stomach Mucosa	stomach
2	chr10:415600-453800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr10:418400-458400	Weak transcription	Small Intestine	intestine
4	chr10:420200-453200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:421600-461800	Weak transcription	A549	lung
6	chr10:423600-480200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr10:428000-452800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:428800-455200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:430200-453000	Weak transcription	Fetal Kidney	kidney
10	chr10:435000-446400	Strong transcription	Fetal Intestine Small	intestine
11	chr10:436200-450600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:436400-450200	Weak transcription	NH-A	brain
13	chr10:436400-450400	Weak transcription	HSMM	muscle
14	chr10:436400-450600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:436400-452800	Weak transcription	HSMMtube	muscle
16	chr10:436400-453200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:436600-450200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:436600-450200	Weak transcription	Liver	Liver
19	chr10:436600-450200	Weak transcription	Osteobl	bone
20	chr10:436600-459600	Weak transcription	Colonic Mucosa	Colon
21	chr10:436600-480200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr10:436600-521200	Weak transcription	HepG2	liver
23	chr10:436800-450200	Weak transcription	NHLF	lung
24	chr10:436800-450800	Weak transcription	NHDF-Ad	bronchial
25	chr10:436800-453400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:436800-454000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:436800-468000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:436800-469000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr10:437000-450200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:437000-450200	Weak transcription	Ovary	ovary
31	chr10:437000-454000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:438400-450200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:438600-450000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:439000-453000	Weak transcription	Gastric	stomach
35	chr10:441000-450400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:441000-450400	Weak transcription	Primary T cells from cord blood	blood
37	chr10:441000-453000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:441000-453000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:441000-453000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:441000-454000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr10:441000-459600	Weak transcription	Esophagus	oesophagus
42	chr10:441000-461800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr10:441600-466600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr10:441800-450200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:442200-450600	Weak transcription	Brain Angular Gyrus	brain
46	chr10:442600-453400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr10:442800-452800	Weak transcription	Fetal Brain Male	brain
48	chr10:442800-455200	Weak transcription	Right Atrium	heart
49	chr10:443200-449600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr10:443200-455200	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links