Variant report

Variant	esv3310937
Chromosome Location	chr15:77328797-77334695
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:76)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:76 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:77330718-77330925	Hela-S3	cervix:	n/a	chr15:77330791-77330804
2	CHD2	chr15:77329799-77329867	Hela-S3	cervix:	n/a	n/a
3	CTCF	chr15:77330980-77331130	HBMEC	blood vessel:	n/a	n/a
4	FOSL2	chr15:77328415-77329141	HepG2	liver:	n/a	chr15:77329067-77329074
5	MAZ	chr15:77330752-77331214	Hela-S3	cervix:	n/a	chr15:77330822-77330831 chr15:77330823-77330832
6	MTA3	chr15:77328514-77329126	GM12878	blood:	n/a	n/a
7	MYC	chr15:77333202-77333253	HUVEC	blood vessel:	n/a	n/a
8	NFATC1	chr15:77328513-77329141	GM12878	blood:	n/a	n/a
9	POLR2A	chr15:77330638-77330689	ProgFib	skin:	n/a	n/a
10	POLR2A	chr15:77328851-77329001	A549	lung:	n/a	n/a
11	POLR2A	chr15:77328726-77329179	HUVEC	blood vessel:	n/a	n/a
12	POLR2A	chr15:77326585-77329462	GM19193	blood:	n/a	n/a
13	POLR2A	chr15:77329820-77330030	GM12878	blood:	n/a	n/a
14	POLR2A	chr15:77330703-77331134	HL-60	blood:	n/a	n/a
15	POLR2A	chr15:77329098-77329375	K562	blood:	n/a	n/a
16	POLR2A	chr15:77328769-77328973	ECC-1	luminal epithelium:	n/a	n/a
17	POLR2A	chr15:77333046-77333432	HL-60	blood:	n/a	n/a
18	POLR2A	chr15:77329840-77330006	K562	blood:	n/a	n/a
19	POLR2A	chr15:77329059-77329075	K562	blood:	n/a	n/a
20	POLR2A	chr15:77328774-77328935	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr15:77329416-77329438	H1-hESC	embryonic stem cell:	n/a	n/a
22	POLR2A	chr15:77328930-77329373	HepG2	liver:	n/a	n/a
23	POLR2A	chr15:77327145-77329493	GM18951	blood:	n/a	n/a
24	POLR2A	chr15:77330716-77331261	Hela-S3	cervix:	n/a	n/a
25	POLR2A	chr15:77332932-77333771	HL-60	blood:	n/a	n/a
26	POLR2A	chr15:77326961-77328926	PFSK-1	brain:	n/a	n/a
27	POLR2A	chr15:77326578-77329129	PFSK-1	brain:	n/a	n/a
28	POLR2A	chr15:77329210-77329244	HUVEC	blood vessel:	n/a	n/a
29	POLR2A	chr15:77333644-77333721	HepG2	liver:	n/a	n/a
30	POLR2A	chr15:77329990-77330001	HepG2	liver:	n/a	n/a
31	POLR2A	chr15:77328254-77330480	NB4	blood:	n/a	n/a
32	POLR2A	chr15:77330257-77330330	HepG2	liver:	n/a	n/a
33	POLR2A	chr15:77328823-77329127	A549	lung:	n/a	n/a
34	POLR2A	chr15:77330079-77330248	HepG2	liver:	n/a	n/a
35	POLR2A	chr15:77330819-77331222	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr15:77328758-77329173	GM12878	blood:	n/a	n/a
37	POLR2A	chr15:77334038-77334059	HepG2	liver:	n/a	n/a
38	POLR2A	chr15:77330071-77330113	H1-hESC	embryonic stem cell:	n/a	n/a
39	POLR2A	chr15:77333962-77333992	HepG2	liver:	n/a	n/a
40	POLR2A	chr15:77320435-77330647	HL-60	blood:	n/a	n/a
41	POLR2A	chr15:77325875-77328912	HepG2	liver:	n/a	n/a
42	POLR2A	chr15:77330357-77330410	K562	blood:	n/a	n/a
43	POLR2A	chr15:77330964-77330968	HepG2	liver:	n/a	n/a
44	POLR2A	chr15:77333901-77336487	HL-60	blood:	n/a	n/a
45	POLR2A	chr15:77326005-77330121	GM18505	blood:	n/a	n/a
46	POLR2A	chr15:77328450-77329137	Hela-S3	cervix:	n/a	n/a
47	POLR2A	chr15:77329155-77329406	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr15:77331453-77332542	HL-60	blood:	n/a	n/a
49	POLR2A	chr15:77334610-77335231	HL-60	blood:	n/a	n/a
50	POLR2A	chr15:77329452-77329490	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:77328280..77330879-chr15:77355103..77356921,2	K562	blood:
2	chr15:77334649..77338471-chr15:77361377..77364899,5	K562	blood:
3	chr15:77332598..77335104-chr15:77338074..77339723,2	MCF-7	breast:
4	chr15:77327656..77330194-chr15:77332164..77335172,3	K562	blood:
5	chr15:77325493..77328166-chr15:77329882..77331634,3	MCF-7	breast:
6	chr15:77327656..77329511-chr15:77332033..77335172,3	K562	blood:
7	chr15:77333192..77335092-chr15:77340971..77343309,2	MCF-7	breast:
8	chr15:77334559..77338244-chr15:77361377..77364599,4	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TSPAN3-1	chr15:77334178-77335144	NONHSAT047418
2	lnc-TSPAN3-1	chr15:77334178-77335533	ENSG00000260787.1
3	lnc-TSPAN3-1	chr15:77333726-77333740	NONHSAT047418

No data

Variant related genes	Relation type
ENSG00000259652	TF binding region
ENSG00000140391	chromatin interactions
ENSG00000140368	chromatin interactions

Extended variants
information (count: 344 )
Associated
traits (count: 52 )

Variant overlapped rSNPs/rCNVs (count:344 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535550373	chr15:77328800-77328801	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs557341423	chr15:77328808-77328809	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs374371227	chr15:77328812-77328813	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs575195512	chr15:77328848-77328849	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs546090571	chr15:77328849-77328850	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs559523988	chr15:77328861-77328862	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs558025594	chr15:77328863-77328864	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs573139638	chr15:77328958-77328959	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs536253089	chr15:77328959-77328960	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs183867383	chr15:77328965-77328966	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs529003530	chr15:77328966-77328967	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs189368761	chr15:77328981-77328982	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs562511130	chr15:77328987-77328988	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs532956171	chr15:77329027-77329028	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs551742974	chr15:77329031-77329032	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs117080115	chr15:77329038-77329039	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs527511934	chr15:77329056-77329057	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs549182466	chr15:77329090-77329091	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs561523366	chr15:77329104-77329105	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs149036825	chr15:77329105-77329106	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs550750763	chr15:77329126-77329127	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs143004123	chr15:77329133-77329134	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs113554225	chr15:77329134-77329135	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs558062415	chr15:77329150-77329151	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs573176123	chr15:77329183-77329184	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs534195842	chr15:77329193-77329194	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs370900344	chr15:77329195-77329196	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs555940090	chr15:77329204-77329205	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs185243245	chr15:77329228-77329229	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs544344574	chr15:77329266-77329267	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs562562986	chr15:77329290-77329291	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs536180052	chr15:77329303-77329304	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs116799868	chr15:77329314-77329315	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs190173070	chr15:77329315-77329316	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs550537172	chr15:77329317-77329318	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs201788590	chr15:77329325-77329326	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs372999755	chr15:77329338-77329339	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs372534330	chr15:77329342-77329343	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs201221498	chr15:77329346-77329347	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs370752949	chr15:77329351-77329352	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs373047005	chr15:77329358-77329359	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs376465836	chr15:77329364-77329365	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs201816551	chr15:77329365-77329366	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs200256020	chr15:77329366-77329367	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs367882218	chr15:77329373-77329374	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs529402949	chr15:77329400-77329401	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs141227274	chr15:77329409-77329410	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs145344175	chr15:77329410-77329411	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs202205180	chr15:77329411-77329412	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs200771233	chr15:77329417-77329418	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:52)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:337 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77314800-77330000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr15:77315400-77330400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr15:77315400-77330600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:77316800-77330200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:77317400-77329800	Strong transcription	Primary T cells from cord blood	blood
6	chr15:77317400-77330600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:77317600-77330400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr15:77318400-77350600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:77321200-77330200	Weak transcription	Brain Germinal Matrix	brain
10	chr15:77321200-77331000	Weak transcription	Fetal Brain Female	brain
11	chr15:77321200-77335400	Weak transcription	Left Ventricle	heart
12	chr15:77321200-77362000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:77323000-77336000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr15:77323200-77330600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:77323200-77334200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:77323400-77346000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:77323800-77334200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:77324000-77329800	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr15:77324200-77329600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr15:77324200-77335200	Weak transcription	NH-A	brain
21	chr15:77324400-77333600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:77324400-77334000	Weak transcription	HSMM	muscle
23	chr15:77325400-77329600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr15:77325800-77329000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:77325800-77334000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:77326400-77330200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:77326400-77335200	Weak transcription	HepG2	liver
28	chr15:77326600-77330400	Genic enhancers	Spleen	Spleen
29	chr15:77326600-77334000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr15:77326800-77334800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr15:77326800-77349800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr15:77327000-77328800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:77327200-77330000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr15:77327200-77333000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
35	chr15:77327200-77334400	Weak transcription	Fetal Kidney	kidney
36	chr15:77327400-77330200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr15:77327400-77336400	Weak transcription	Psoas Muscle	Psoas
38	chr15:77327400-77346000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr15:77327600-77329000	Enhancers	NHEK	skin
40	chr15:77327600-77329200	Weak transcription	Fetal Intestine Large	intestine
41	chr15:77327600-77329800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:77327600-77330200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
43	chr15:77327600-77330200	Strong transcription	Colonic Mucosa	Colon
44	chr15:77327600-77331600	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:77327600-77334200	Weak transcription	Brain Anterior Caudate	brain
46	chr15:77327600-77335200	Weak transcription	Ovary	ovary
47	chr15:77327600-77335800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr15:77327600-77338000	Weak transcription	NHDF-Ad	bronchial
49	chr15:77327800-77328800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:77327800-77329000	Genic enhancers	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links