Variant report

Variant	esv3311565
Chromosome Location	chr15:93314392-93316077
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93314719..93317520-chr15:93318260..93321146,2	MCF-7	breast:
2	chr15:93314575..93317372-chr15:93351909..93353972,2	MCF-7	breast:
3	chr15:93314139..93315981-chr15:93421509..93423581,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHD2-10	chr15:93315694-93315782	NONHSAT049659

Variant related genes	Relation type
ENSG00000185442	chromatin interactions

Extended variants
information (count: 79 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:79 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs533904846	chr15:93314393-93314394	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs564839193	chr15:93314394-93314395	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs76757535	chr15:93314402-93314403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs527506199	chr15:93314411-93314412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs567482838	chr15:93314426-93314427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs542447608	chr15:93314458-93314459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs536044250	chr15:93314487-93314488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs189215419	chr15:93314488-93314489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs141799547	chr15:93314526-93314527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs558405718	chr15:93314537-93314538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs192850700	chr15:93314558-93314559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs544047499	chr15:93314566-93314567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs558954242	chr15:93314567-93314568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs12907203	chr15:93314586-93314587	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs576025659	chr15:93314591-93314592	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs184872526	chr15:93314608-93314609	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs567289395	chr15:93314615-93314616	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs555277612	chr15:93314623-93314624	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs575009261	chr15:93314654-93314655	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs8032398	chr15:93314686-93314687	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs188854733	chr15:93314721-93314722	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs8031203	chr15:93314745-93314746	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs544612664	chr15:93314769-93314770	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs564503917	chr15:93314775-93314776	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs530405462	chr15:93314784-93314785	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs71412574	chr15:93314829-93314830	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs142687431	chr15:93314833-93314834	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs375195530	chr15:93314856-93314857	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs181651405	chr15:93314895-93314896	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs561354680	chr15:93314914-93314915	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs529946855	chr15:93314918-93314919	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs573221128	chr15:93314940-93314941	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs546434216	chr15:93314952-93314953	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs540701498	chr15:93314998-93314999	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs566967454	chr15:93315076-93315077	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs143458200	chr15:93315129-93315130	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs544197850	chr15:93315139-93315140	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs116742167	chr15:93315143-93315144	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs56290855	chr15:93315154-93315155	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs569300853	chr15:93315158-93315159	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs547977343	chr15:93315163-93315164	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs149620758	chr15:93315167-93315168	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs139523236	chr15:93315168-93315169	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs199967160	chr15:93315171-93315172	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs150550276	chr15:93315186-93315187	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs55939294	chr15:93315211-93315212	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs554031913	chr15:93315263-93315264	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs572909071	chr15:93315278-93315279	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs538212030	chr15:93315292-93315293	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs532746167	chr15:93315293-93315294	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Acute myeloid leukemia	17237825	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93295800-93323200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr15:93304800-93344800	Weak transcription	Aorta	Aorta
3	chr15:93311400-93322800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:93313000-93330400	Weak transcription	Lung	lung
5	chr15:93314200-93314400	Enhancers	Spleen	Spleen
6	chr15:93314400-93316000	Weak transcription	Spleen	Spleen
7	chr15:93315000-93317200	Enhancers	HepG2	liver
8	chr15:93315000-93325200	Weak transcription	Right Ventricle	heart
9	chr15:93315200-93315400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr15:93315200-93315400	Enhancers	Ovary	ovary
11	chr15:93315200-93315400	Enhancers	Pancreas	Pancrea
12	chr15:93315400-93316600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:93315400-93340200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:93315400-93340400	Weak transcription	Pancreas	Pancrea
15	chr15:93315400-93340600	Weak transcription	Ovary	ovary
16	chr15:93316000-93317200	Enhancers	Spleen	Spleen

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