Variant report

Variant	esv3311745
Chromosome Location	chr15:44136688-44139173
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44130808..44133244-chr15:44134272..44137291,3	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:81 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs147727636	chr15:44136692-44136693	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs185737619	chr15:44136726-44136727	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs564005479	chr15:44136755-44136756	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs533082415	chr15:44136766-44136767	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs189702325	chr15:44136767-44136768	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs562994504	chr15:44136789-44136790	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs35536883	chr15:44136812-44136813	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs375632554	chr15:44136845-44136846	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs3102448	chr15:44136933-44136934	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs548827032	chr15:44136934-44136935	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs68079546	chr15:44136957-44136958	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs528243962	chr15:44137042-44137043	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs551578678	chr15:44137080-44137081	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs371424226	chr15:44137163-44137164	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs374646128	chr15:44137169-44137170	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs557815512	chr15:44137198-44137199	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs570839394	chr15:44137221-44137222	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs113759634	chr15:44137228-44137229	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
19	rs556593870	chr15:44137245-44137246	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs534719841	chr15:44137246-44137247	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs570018742	chr15:44137271-44137272	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs535858885	chr15:44137305-44137306	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs556061316	chr15:44137332-44137333	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs572727299	chr15:44137364-44137365	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs534890958	chr15:44137365-44137366	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs182362059	chr15:44137417-44137418	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs554372610	chr15:44137438-44137439	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs577664801	chr15:44137478-44137479	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs543070686	chr15:44137507-44137508	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs112030070	chr15:44137510-44137511	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs573270217	chr15:44137516-44137517	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs542234539	chr15:44137606-44137607	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs56909447	chr15:44137618-44137619	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs185416337	chr15:44137637-44137638	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs151166662	chr15:44137650-44137651	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs565133815	chr15:44137745-44137746	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs530621247	chr15:44137753-44137754	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs550257023	chr15:44137757-44137758	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs140100888	chr15:44137817-44137818	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs556898031	chr15:44137861-44137862	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs535828159	chr15:44137883-44137884	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs549435266	chr15:44137978-44137979	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs566233398	chr15:44137992-44137993	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs150285217	chr15:44138004-44138005	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs558173407	chr15:44138018-44138019	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs578095177	chr15:44138029-44138030	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs553758289	chr15:44138043-44138044	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs556614195	chr15:44138048-44138049	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs563760072	chr15:44138081-44138082	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs575953301	chr15:44138189-44138190	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	21129771	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21045282	CNVD
Breast cancer	22032731	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Mental retardation	17124404	CNVD

Chromatin state (count:167 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44117400-44150200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:44119600-44142000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:44119600-44143200	Weak transcription	Aorta	Aorta
4	chr15:44119600-44143400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:44119600-44150600	Weak transcription	Esophagus	oesophagus
6	chr15:44119600-44151000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:44119600-44156400	Weak transcription	Pancreas	Pancrea
8	chr15:44119600-44166000	Weak transcription	Spleen	Spleen
9	chr15:44119600-44169400	Weak transcription	Fetal Intestine Large	intestine
10	chr15:44119600-44172800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:44119600-44181800	Weak transcription	Small Intestine	intestine
12	chr15:44119600-44183200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:44119800-44144400	Weak transcription	Right Ventricle	heart
14	chr15:44119800-44166400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr15:44120200-44150800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:44120400-44143000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:44120600-44137800	Weak transcription	NH-A	brain
18	chr15:44120600-44138200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:44120600-44140200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:44120600-44143200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:44120600-44143200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr15:44120600-44149200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr15:44120600-44150800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:44120600-44150800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr15:44120600-44156600	Weak transcription	Fetal Brain Male	brain
26	chr15:44120600-44157800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr15:44120600-44158600	Weak transcription	Colonic Mucosa	Colon
28	chr15:44120600-44159600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr15:44120600-44161200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:44120600-44164600	Weak transcription	Brain Hippocampus Middle	brain
31	chr15:44120600-44164600	Weak transcription	NHEK	skin
32	chr15:44120600-44165800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:44121000-44137400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:44121000-44137400	Weak transcription	Osteobl	bone
35	chr15:44121000-44143000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr15:44121000-44143200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr15:44121000-44143200	Weak transcription	HSMM	muscle
38	chr15:44121000-44177600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr15:44121400-44159600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr15:44121400-44160600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:44121600-44150800	Weak transcription	Fetal Heart	heart
42	chr15:44121600-44151200	Weak transcription	NHLF	lung
43	chr15:44122000-44157000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr15:44122400-44143200	Weak transcription	Placenta	Placenta
45	chr15:44124000-44166000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:44124600-44150800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr15:44126200-44136800	Strong transcription	Dnd41	blood
48	chr15:44126200-44140800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:44126400-44140200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:44126400-44140800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links