Variant report

Variant	esv3314574
Chromosome Location	chr10:42454572-42457140
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 240 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:240 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs532920033	chr10:42454600-42454601	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs74601033	chr10:42454602-42454603	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs546326097	chr10:42454607-42454608	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs78707339	chr10:42454615-42454616	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs77998202	chr10:42454616-42454617	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs187165875	chr10:42454619-42454620	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs535346055	chr10:42454622-42454623	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs76230076	chr10:42454635-42454636	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs79773492	chr10:42454637-42454638	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs555121625	chr10:42454640-42454641	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs78587779	chr10:42454648-42454649	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs76652325	chr10:42454663-42454664	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs555152953	chr10:42454664-42454665	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs12264642	chr10:42454668-42454669	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs10909021	chr10:42454677-42454678	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs76361468	chr10:42454697-42454698	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs76955316	chr10:42454701-42454702	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs202095265	chr10:42454702-42454703	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs200595582	chr10:42454712-42454713	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs79363772	chr10:42454719-42454720	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs537507780	chr10:42454757-42454758	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs192405779	chr10:42454763-42454764	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs74364622	chr10:42454784-42454785	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs141118761	chr10:42454790-42454791	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs74470515	chr10:42454793-42454794	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs12251574	chr10:42454796-42454797	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs74871773	chr10:42454800-42454801	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs74935953	chr10:42454801-42454802	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs75127511	chr10:42454806-42454807	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs74922678	chr10:42454810-42454811	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs75296558	chr10:42454814-42454815	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs78760422	chr10:42454820-42454821	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs548083261	chr10:42454821-42454822	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs78104128	chr10:42454826-42454827	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs553131795	chr10:42454837-42454838	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs11499328	chr10:42454839-42454840	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs541746614	chr10:42454842-42454843	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs75347413	chr10:42454845-42454846	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs75323946	chr10:42454852-42454853	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs377705323	chr10:42454859-42454860	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs79418877	chr10:42454863-42454864	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs374742362	chr10:42454864-42454865	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs575083393	chr10:42454878-42454879	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs368953325	chr10:42454893-42454894	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs537347235	chr10:42454902-42454903	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs10909022	chr10:42454909-42454910	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs35047496	chr10:42454910-42454911	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs150231323	chr10:42454927-42454928	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs532926926	chr10:42454936-42454937	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs546532983	chr10:42454938-42454939	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42448000-42458200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:42453200-42454600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr10:42454000-42456600	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr10:42454000-42457000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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