Variant report

Variant	esv3314585
Chromosome Location	chr10:42455855-42457212
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:125 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs573737297	chr10:42455867-42455868	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs542745439	chr10:42455935-42455936	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs556161852	chr10:42455942-42455943	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs573354891	chr10:42455951-42455952	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs545017631	chr10:42455957-42455958	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs193289339	chr10:42455958-42455959	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs533725092	chr10:42455965-42455966	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs558785160	chr10:42455994-42455995	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs116476414	chr10:42456030-42456031	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs145192567	chr10:42456031-42456032	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs79722512	chr10:42456034-42456035	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs74847105	chr10:42456075-42456076	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs538976964	chr10:42456088-42456089	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs531583332	chr10:42456089-42456090	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs9794252	chr10:42456114-42456115	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs551799275	chr10:42456128-42456129	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs149149137	chr10:42456139-42456140	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs566217937	chr10:42456150-42456151	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs562520007	chr10:42456153-42456154	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs534101881	chr10:42456157-42456158	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs184178302	chr10:42456177-42456178	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs567486258	chr10:42456197-42456198	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs536486484	chr10:42456212-42456213	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs574775478	chr10:42456241-42456242	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs570315395	chr10:42456251-42456252	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs186739598	chr10:42456256-42456257	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs535120753	chr10:42456287-42456288	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs61846582	chr10:42456296-42456297	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs578149906	chr10:42456302-42456303	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs555230661	chr10:42456305-42456306	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs560405354	chr10:42456322-42456323	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs191507002	chr10:42456327-42456328	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs568624786	chr10:42456333-42456334	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs11528789	chr10:42456340-42456341	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs151261387	chr10:42456346-42456347	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs141666906	chr10:42456347-42456348	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs562836611	chr10:42456355-42456356	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs531873716	chr10:42456359-42456360	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs188722837	chr10:42456380-42456381	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs565283210	chr10:42456382-42456383	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs58063424	chr10:42456385-42456386	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs527561641	chr10:42456392-42456393	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs547699683	chr10:42456401-42456402	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs181456647	chr10:42456410-42456411	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs147078940	chr10:42456422-42456423	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs138501735	chr10:42456427-42456428	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs550040989	chr10:42456429-42456430	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs61686593	chr10:42456431-42456432	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs557607408	chr10:42456444-42456445	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs558242686	chr10:42456446-42456447	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42448000-42458200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:42454000-42456600	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr10:42454000-42457000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links