Variant report

Variant	esv3315263
Chromosome Location	chr10:58951882-58953481
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:86 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs558420302	chr10:58951900-58951901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs71506271	chr10:58951909-58951910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs565982432	chr10:58951915-58951916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs190683295	chr10:58951939-58951940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs554800712	chr10:58951957-58951958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs182513889	chr10:58951959-58951960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs543918235	chr10:58951967-58951968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs187119769	chr10:58951968-58951969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs577279474	chr10:58952018-58952019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs541429449	chr10:58952032-58952033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs191885301	chr10:58952054-58952055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs182470940	chr10:58952086-58952087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs147379291	chr10:58952087-58952088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs531047300	chr10:58952099-58952100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs146030013	chr10:58952116-58952117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs148391565	chr10:58952130-58952131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs564605271	chr10:58952147-58952148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs369856855	chr10:58952150-58952151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs531604263	chr10:58952236-58952237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs531979890	chr10:58952266-58952267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs187942816	chr10:58952273-58952274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs565585500	chr10:58952301-58952302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs536536793	chr10:58952321-58952322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs550236767	chr10:58952343-58952344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs570056392	chr10:58952349-58952350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs141649679	chr10:58952352-58952353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs73291739	chr10:58952353-58952354	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs559056119	chr10:58952382-58952383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs150903404	chr10:58952389-58952390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs193032684	chr10:58952401-58952402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs139424055	chr10:58952426-58952427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs529585144	chr10:58952456-58952457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs548129008	chr10:58952470-58952471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs542104499	chr10:58952499-58952500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs199501856	chr10:58952505-58952506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs75525488	chr10:58952526-58952527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs575405111	chr10:58952530-58952531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs546002678	chr10:58952532-58952533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs185721276	chr10:58952534-58952535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs564597839	chr10:58952536-58952537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs146598909	chr10:58952563-58952564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs574908209	chr10:58952588-58952589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs140133006	chr10:58952590-58952591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs188748970	chr10:58952598-58952599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs558365800	chr10:58952616-58952617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs76927919	chr10:58952665-58952666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs548476487	chr10:58952669-58952670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs569979237	chr10:58952703-58952704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs537200185	chr10:58952719-58952720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs143654138	chr10:58952733-58952734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58930200-58959200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:58952400-58968400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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