Variant report

Variant	esv3317541
Chromosome Location	chr10:42604346-42610544
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 623 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:623 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs61845463	chr10:42604348-42604349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs77793937	chr10:42604351-42604352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs570132670	chr10:42604352-42604353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs182970381	chr10:42604379-42604380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs552524227	chr10:42604386-42604387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs145297261	chr10:42604396-42604397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs201851657	chr10:42604405-42604406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs534911534	chr10:42604414-42604415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs187621211	chr10:42604422-42604423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs373929328	chr10:42604426-42604427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs193240080	chr10:42604460-42604461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs77289290	chr10:42604462-42604463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs536813624	chr10:42604469-42604470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs377516804	chr10:42604475-42604476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs373623284	chr10:42604488-42604489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs545624964	chr10:42604498-42604499	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs370395948	chr10:42604503-42604504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs370403296	chr10:42604515-42604516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552922595	chr10:42604516-42604517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs370258775	chr10:42604517-42604518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs137933254	chr10:42604529-42604530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs185671983	chr10:42604551-42604552	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs189449219	chr10:42604563-42604564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs12269397	chr10:42604571-42604572	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs544016203	chr10:42604572-42604573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs184008189	chr10:42604583-42604584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs374441923	chr10:42604587-42604588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs188690852	chr10:42604589-42604590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs372387932	chr10:42604593-42604594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs547075713	chr10:42604594-42604595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs548190666	chr10:42604643-42604644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs368406572	chr10:42604663-42604664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs113455622	chr10:42604691-42604692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs376853103	chr10:42604692-42604693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs200344340	chr10:42604712-42604713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs12164788	chr10:42604715-42604716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs12266073	chr10:42604731-42604732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs113619699	chr10:42604745-42604746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs61845464	chr10:42604750-42604751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs12164699	chr10:42604751-42604752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs202080305	chr10:42604760-42604761	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs536975898	chr10:42604765-42604766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs12164789	chr10:42604773-42604774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs12266128	chr10:42604801-42604802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs570594415	chr10:42604802-42604803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs12257384	chr10:42604811-42604812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs552747382	chr10:42604817-42604818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs12263666	chr10:42604824-42604825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs201253428	chr10:42604848-42604849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs61845465	chr10:42604876-42604877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Autism	20531469	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42600200-42606400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:42602200-42605800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:42605800-42608800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr10:42606400-42607800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:42606400-42608800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr10:42606400-42608800	ZNF genes & repeats	Fetal Stomach	stomach
7	chr10:42606400-42609000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:42606600-42608400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr10:42606800-42608400	ZNF genes & repeats	Placenta	Placenta

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