Variant report

Variant	esv3318363
Chromosome Location	chr10:91996572-92001470
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 154 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:154 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs543220348	chr10:91996578-91996579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs563207385	chr10:91996616-91996617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs532045585	chr10:91996637-91996638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs7909922	chr10:91996745-91996746	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs527530694	chr10:91996786-91996787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs564111729	chr10:91996797-91996798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs532751683	chr10:91996868-91996869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs546330804	chr10:91996897-91996898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs566226928	chr10:91996898-91996899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs200232480	chr10:91996951-91996952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs535295529	chr10:91996969-91996970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs547562742	chr10:91997032-91997033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs548752750	chr10:91997045-91997046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs151047665	chr10:91997077-91997078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs140711211	chr10:91997136-91997137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs144954931	chr10:91997212-91997213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs189463277	chr10:91997225-91997226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs534178464	chr10:91997257-91997258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs375508243	chr10:91997264-91997265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs554332480	chr10:91997298-91997299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs372066875	chr10:91997332-91997333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs116168833	chr10:91997343-91997344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs563078803	chr10:91997371-91997372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs550086631	chr10:91997378-91997379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs576533124	chr10:91997395-91997396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs147952746	chr10:91997401-91997402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs549584275	chr10:91997464-91997465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs565424303	chr10:91997468-91997469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs532971759	chr10:91997479-91997480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs539837901	chr10:91997480-91997481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs192748856	chr10:91997495-91997496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs535065443	chr10:91997520-91997521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs528964439	chr10:91997648-91997649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs548620048	chr10:91997661-91997662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs117572873	chr10:91997663-91997664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs531368701	chr10:91997708-91997709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs5786899	chr10:91997739-91997740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs397802188	chr10:91997741-91997742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs75066992	chr10:91997742-91997743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs551684485	chr10:91997757-91997758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs571450355	chr10:91997803-91997804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs184497512	chr10:91997831-91997832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs141774475	chr10:91997839-91997840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs117892993	chr10:91997879-91997880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs567618873	chr10:91997880-91997881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs189375167	chr10:91997966-91997967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs150443322	chr10:91997988-91997989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs576611595	chr10:91998011-91998012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs144951469	chr10:91998021-91998022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs182090887	chr10:91998024-91998025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91992600-92005000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:92001400-92001800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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