Variant report

Variant	esv3318460
Chromosome Location	chr19:22590296-22590938
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF676-4	chr19:22590201-22591195	ucscGeneNc_uc002nqv_2

Extended variants
information (count: 30 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs548097781	chr19:22590313-22590314	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs552374745	chr19:22590314-22590315	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs566529941	chr19:22590319-22590320	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs534030641	chr19:22590324-22590325	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs12976630	chr19:22590340-22590341	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs12983035	chr19:22590392-22590393	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
7	rs538346587	chr19:22590438-22590439	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
8	rs570829607	chr19:22590446-22590447	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
9	rs574902030	chr19:22590468-22590469	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
10	rs554015674	chr19:22590582-22590583	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
11	rs12983542	chr19:22590585-22590586	Active TSS	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs117317048	chr19:22590598-22590599	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
13	rs190605587	chr19:22590599-22590600	Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
14	rs145198774	chr19:22590601-22590602	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
15	rs564525854	chr19:22590622-22590623	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
16	rs12984257	chr19:22590664-22590665	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs555709013	chr19:22590670-22590671	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
18	rs545298019	chr19:22590700-22590701	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
19	rs562112857	chr19:22590737-22590738	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
20	rs181072468	chr19:22590742-22590743	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
21	rs558685800	chr19:22590747-22590748	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
22	rs572343678	chr19:22590750-22590751	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
23	rs541117210	chr19:22590769-22590770	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
24	rs368561487	chr19:22590784-22590785	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
25	rs527493804	chr19:22590787-22590788	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
26	rs552303811	chr19:22590805-22590806	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs143626724	chr19:22590830-22590831	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs538307909	chr19:22590844-22590845	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs550320054	chr19:22590849-22590850	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs112866031	chr19:22590900-22590901	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:22590400-22590600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr19:22590600-22590800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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