Variant report

Variant	esv3320818
Chromosome Location	chr10:5202105-5324796
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:782)
CpG islands
(count:732)
Chromatin interactive
region (count:34)
LncRNA
region (count:13)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:782 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:5236523-5236713	HepG2	liver:	n/a	n/a
2	ARID3A	chr10:5276009-5276456	HepG2	liver:	n/a	n/a
3	ARID3A	chr10:5285389-5285941	HepG2	liver:	n/a	n/a
4	ARID3A	chr10:5237741-5238762	HepG2	liver:	n/a	n/a
5	ARID3A	chr10:5239083-5239264	HepG2	liver:	n/a	n/a
6	ARID3A	chr10:5261272-5261624	HepG2	liver:	n/a	n/a
7	ARID3A	chr10:5275365-5275665	HepG2	liver:	n/a	n/a
8	ATF1	chr10:5276143-5276340	K562	blood:	n/a	n/a
9	ATF1	chr10:5300425-5300441	K562	blood:	n/a	n/a
10	ATF3	chr10:5207727-5207953	K562	blood:	n/a	n/a
11	BACH1	chr10:5314029-5314452	H1-hESC	embryonic stem cell:	n/a	chr10:5314219-5314233
12	BACH1	chr10:5314040-5314410	K562	blood:	n/a	chr10:5314219-5314233
13	BCL3	chr10:5237721-5238466	A549	lung:	n/a	n/a
14	BHLHE40	chr10:5207857-5208008	K562	blood:	n/a	n/a
15	BHLHE40	chr10:5276097-5276402	HepG2	liver:	n/a	n/a
16	CBX3	chr10:5207656-5208172	HCT-116	colon:	n/a	n/a
17	CBX3	chr10:5207589-5208043	HCT-116	colon:	n/a	n/a
18	CBX3	chr10:5252304-5252616	K562	blood:	n/a	n/a
19	CBX3	chr10:5207666-5208060	K562	blood:	n/a	n/a
20	CBX3	chr10:5207663-5208074	K562	blood:	n/a	n/a
21	CBX3	chr10:5253743-5253974	K562	blood:	n/a	n/a
22	CEBPB	chr10:5285358-5285791	HepG2	liver:	n/a	n/a
23	CEBPB	chr10:5294450-5294655	HepG2	liver:	n/a	n/a
24	CEBPB	chr10:5245825-5245991	K562	blood:	n/a	chr10:5245947-5245960 chr10:5245947-5245958
25	CEBPB	chr10:5276098-5276385	Hela-S3	cervix:	n/a	chr10:5276210-5276221 chr10:5276211-5276222
26	CEBPB	chr10:5275974-5276527	MCF-7	breast:	n/a	chr10:5276210-5276221 chr10:5276211-5276222
27	CEBPB	chr10:5283692-5283767	HepG2	liver:	n/a	chr10:5283712-5283723
28	CEBPB	chr10:5276086-5276358	HepG2	liver:	n/a	chr10:5276210-5276221 chr10:5276211-5276222
29	CEBPB	chr10:5276021-5276478	HepG2	liver:	n/a	chr10:5276210-5276221 chr10:5276211-5276222
30	CEBPB	chr10:5283675-5283701	A549	lung:	n/a	n/a
31	CEBPB	chr10:5276106-5276400	IMR90	lung:	n/a	chr10:5276210-5276221 chr10:5276211-5276222
32	CEBPB	chr10:5238003-5238282	HepG2	liver:	n/a	n/a
33	CEBPB	chr10:5237719-5238565	A549	lung:	n/a	n/a
34	CEBPB	chr10:5229978-5230172	HepG2	liver:	n/a	chr10:5230049-5230066 chr10:5230051-5230062 chr10:5230050-5230063
35	CEBPB	chr10:5285396-5285741	HepG2	liver:	n/a	n/a
36	CEBPB	chr10:5276037-5276457	A549	lung:	n/a	chr10:5276210-5276221 chr10:5276211-5276222
37	CEBPB	chr10:5283605-5283805	K562	blood:	n/a	chr10:5283712-5283723
38	CEBPB	chr10:5245775-5246108	K562	blood:	n/a	chr10:5245947-5245960 chr10:5245947-5245958
39	CEBPB	chr10:5276115-5276258	K562	blood:	n/a	chr10:5276210-5276221 chr10:5276211-5276222
40	CEBPB	chr10:5275837-5276578	A549	lung:	n/a	chr10:5276210-5276221 chr10:5276211-5276222
41	CEBPB	chr10:5285419-5285640	HepG2	liver:	n/a	n/a
42	CEBPB	chr10:5275567-5275767	HepG2	liver:	n/a	n/a
43	CEBPB	chr10:5320571-5320633	A549	lung:	n/a	n/a
44	CEBPB	chr10:5276044-5276405	K562	blood:	n/a	chr10:5276210-5276221 chr10:5276211-5276222
45	CEBPB	chr10:5276049-5276449	HepG2	liver:	n/a	chr10:5276210-5276221 chr10:5276211-5276222
46	CEBPB	chr10:5245810-5246081	K562	blood:	n/a	chr10:5245947-5245960 chr10:5245947-5245958
47	CEBPB	chr10:5275967-5276495	HepG2	liver:	n/a	chr10:5276210-5276221 chr10:5276211-5276222
48	CEBPB	chr10:5245800-5246081	HepG2	liver:	n/a	chr10:5245947-5245960 chr10:5245947-5245958
49	CEBPB	chr10:5237947-5238365	HepG2	liver:	n/a	n/a
50	CEBPB	chr10:5294448-5294773	A549	lung:	n/a	n/a

(count:732 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:5237853-5237903	GM12878	blood:	n/a
2	chr10:5227162-5227212	SKMC	muscle:	n/a
3	chr10:5227162-5227212	HCF	heart:	n/a
4	chr10:5203419-5203469	GM12891	blood:	n/a
5	chr10:5237853-5237903	Hela-S3	cervix:	n/a
6	chr10:5203419-5203469	CMK	blood:	n/a
7	chr10:5237869-5237919	AG04449	skin:	fetal
8	chr10:5237853-5237903	HRPEpiC	eye:	n/a
9	chr10:5237881-5237931	HUVEC	blood vessel:	n/a
10	chr10:5237881-5237931	SAEC	small airway:	n/a
11	chr10:5203419-5203469	GM19239	blood:	n/a
12	chr10:5238881-5238931	NB4	blood:	n/a
13	chr10:5227312-5227362	U87	brain:	n/a
14	chr10:5228106-5228156	Hela-S3	cervix:	n/a
15	chr10:5227757-5227807	NT2-D1	testis:	n/a
16	chr10:5227162-5227212	HRPEpiC	eye:	n/a
17	chr10:5237881-5237931	SKMC	muscle:	n/a
18	chr10:5227312-5227362	AG09319	gingival:	n/a
19	chr10:5238881-5238931	NH-A	brain:	n/a
20	chr10:5227312-5227362	RPTEC	kidney:	n/a
21	chr10:5237853-5237903	MCF10A-Er-Src	breast:	n/a
22	chr10:5302629-5302679	BJ	skin:	n/a
23	chr10:5228106-5228156	GM19239	blood:	n/a
24	chr10:5203419-5203469	SKMC	muscle:	n/a
25	chr10:5203419-5203469	Hepatocyte	liver:	n/a
26	chr10:5228106-5228156	HCM	heart:	n/a
27	chr10:5237853-5237903	AG09319	gingival:	n/a
28	chr10:5238881-5238931	SK-N-SH_RA	brain:	n/a
29	chr10:5237881-5237931	HCF	heart:	n/a
30	chr10:5238881-5238931	HCPEpiC	choroid plexus:	n/a
31	chr10:5238881-5238931	U87	brain:	n/a
32	chr10:5246625-5246675	MCF10A-Er-Src	breast:	n/a
33	chr10:5237853-5237903	AG04450	lung:	fetal
34	chr10:5237853-5237903	U87	brain:	n/a
35	chr10:5227162-5227212	H1-hESC	embryonic stem cell:	embryo
36	chr10:5203419-5203469	MCF-7	breast:	n/a
37	chr10:5246625-5246675	HAEpiC	amniotic membrane:	n/a
38	chr10:5203419-5203469	Caco-2	colon:	n/a
39	chr10:5237853-5237903	HL-60	blood:	n/a
40	chr10:5246625-5246675	A549	lung:	n/a
41	chr10:5227162-5227212	Caco-2	colon:	n/a
42	chr10:5237853-5237903	NB4	blood:	n/a
43	chr10:5228106-5228156	T-47D	breast:	n/a
44	chr10:5237853-5237903	HCF	heart:	n/a
45	chr10:5238881-5238931	IMR90	lung:	fetal
46	chr10:5203419-5203469	HNPCEpiC	eye:	n/a
47	chr10:5227162-5227212	AG04450	lung:	fetal
48	chr10:5237869-5237919	GM12878	blood:	n/a
49	chr10:5203419-5203469	BJ	skin:	n/a
50	chr10:5237881-5237931	HNPCEpiC	eye:	n/a

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5256183..5258752-chr10:5259686..5261941,2	K562	blood:
2	chr10:5193912..5196444-chr10:5202827..5204457,2	K562	blood:
3	chr10:5210740..5212996-chr10:5319959..5322251,2	MCF-7	breast:
4	chr10:5285994..5288790-chr10:5292059..5294701,2	MCF-7	breast:
5	chr10:5285721..5288092-chr10:5296102..5298963,2	K562	blood:
6	chr10:5250240..5252491-chr10:5252736..5256514,3	K562	blood:
7	chr10:5248069..5249924-chr10:5250712..5252871,2	K562	blood:
8	chr10:5227828..5229662-chr10:5232988..5235057,2	K562	blood:
9	chr10:5228162..5230153-chr10:5232988..5235199,2	K562	blood:
10	chr10:4856147..4859117-chr10:5323721..5326556,2	K562	blood:
11	chr10:5285721..5288092-chr10:5296102..5298963,2	K562	blood:
12	chr10:5314790..5316685-chr10:5325493..5327295,2	K562	blood:
13	chr10:5250240..5252491-chr10:5252736..5256514,3	K562	blood:
14	chr10:5225688..5227346-chr10:5233053..5235554,2	MCF-7	breast:
15	chr10:5189042..5190566-chr10:5324451..5326870,2	MCF-7	breast:
16	chr10:5308367..5310948-chr10:5323905..5325582,2	K562	blood:
17	chr10:5254857..5257683-chr10:5259686..5261466,3	K562	blood:
18	chr10:5198281..5200177-chr10:5228677..5230787,2	K562	blood:
19	chr10:5241329..5242148-chr10:5325053..5325709,2	MCF-7	breast:
20	chr10:5247043..5249924-chr10:5250707..5254146,4	K562	blood:
21	chr10:5309166..5310938-chr10:5312604..5314202,2	K562	blood:
22	chr10:5285994..5288790-chr10:5292059..5294701,2	MCF-7	breast:
23	chr10:5231335..5234110-chr10:5249009..5251135,2	MCF-7	breast:
24	chr10:5196320..5198098-chr10:5207185..5208709,2	MCF-7	breast:
25	chr10:5300898..5303251-chr10:5486479..5488838,2	K562	blood:
26	chr10:5254857..5257683-chr10:5259686..5261466,3	K562	blood:
27	chr10:5239744..5241358-chr10:5244602..5246718,2	K562	blood:
28	chr10:5136517..5137515-chr10:5241491..5242054,2	MCF-7	breast:
29	chr10:5227828..5229662-chr10:5232988..5235057,2	K562	blood:
30	chr10:5308367..5310948-chr10:5323905..5325582,2	K562	blood:
31	chr10:5210740..5212996-chr10:5319959..5322251,2	MCF-7	breast:
32	chr10:5256183..5258752-chr10:5259686..5261941,2	K562	blood:
33	chr10:5228162..5230153-chr10:5232988..5235199,2	K562	blood:
34	chr10:5239744..5241358-chr10:5244602..5246718,2	K562	blood:

(count:13 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKR1CL1-1	chr10:5307996-5308648	XLOC_008706
2	lnc-AKR1C4-1	chr10:5304928-5305371	ENSG00000231039.2
3	lnc-AKR1C4-2	chr10:5237425-5237538	NONHSAT011140
4	lnc-AKR1CL1-3	chr10:5297996-5298648	NONHSAT011146
5	lnc-AKR1C4-1	chr10:5276321-5276556	ENSG00000231039.2
6	lnc-AKR1CL1-3	chr10:5303161-5303199	NONHSAT011146
7	lnc-AKR1C3-5	chr10:5249132-5249705	NONHSAT011142
8	lnc-AKR1C4-2	chr10:5238192-5238885	NONHSAT011140
9	lnc-AKR1C4-3	chr10:5266321-5266555	NONHSAT011143
10	lnc-AKR1C4-3	chr10:5294924-5295165	NONHSAT011143
11	lnc-AKR1C4-1	chr10:5304924-5305165	XLOC_008363
12	lnc-AKR1C4-1	chr10:5276321-5276555	XLOC_008363
13	lnc-AKR1CL1-1	chr10:5313161-5313199	XLOC_008706

No data

Variant related genes	Relation type
ENSG00000251909	TF binding region
ENSG00000224034	TF binding region
ENSG00000231039	TF binding region
AKR1C4	TF binding region
ENSG00000228291	TF binding region
AKR1CL1	TF binding region
ENSG00000251909	CpG island
ENSG00000224034	CpG island
ENSG00000231039	CpG island
AKR1C4	CpG island
ENSG00000228291	CpG island
AKR1CL1	CpG island
ENSG00000196139	chromatin interactions
ENSG00000196326	chromatin interactions
ENSG00000228291	chromatin interactions
ENSG00000173848	chromatin interactions
ENSG00000224034	chromatin interactions
OLIG3	miRNA target sites
LRP1B	miRNA target sites

Extended variants
information (count: 5865 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:5865 , 50 per page) page: 1 2 3 4 5 6 7 ... 118

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142161677	chr10:5202142-5202143	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs111558200	chr10:5202145-5202146	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs546293850	chr10:5202182-5202183	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs41460145	chr10:5202221-5202222	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs1761599	chr10:5202241-5202242	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs185408902	chr10:5202304-5202305	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs189672316	chr10:5202315-5202316	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs565970043	chr10:5202342-5202343	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs138192813	chr10:5202343-5202344	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs530062153	chr10:5202344-5202345	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs548561413	chr10:5202354-5202355	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs12769156	chr10:5202403-5202404	Weak transcription Strong transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs114231120	chr10:5202404-5202405	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs140799212	chr10:5202431-5202432	Weak transcription Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs574540280	chr10:5202449-5202450	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs558602479	chr10:5202456-5202457	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs1931680	chr10:5202480-5202481	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs534881919	chr10:5202553-5202554	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs553199009	chr10:5202560-5202561	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs574745769	chr10:5202601-5202602	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs542520816	chr10:5202610-5202611	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs557039565	chr10:5202624-5202625	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs575617717	chr10:5202806-5202807	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs61729615	chr10:5202835-5202836	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs367634113	chr10:5202896-5202897	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs543580945	chr10:5202902-5202903	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs142853478	chr10:5202924-5202925	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs7067921	chr10:5202925-5202926	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs559588646	chr10:5202944-5202945	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs529903082	chr10:5202958-5202959	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs76324731	chr10:5202968-5202969	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs569882479	chr10:5202992-5202993	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs575706155	chr10:5203000-5203001	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs147436329	chr10:5203017-5203018	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs138066709	chr10:5203021-5203022	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs114250254	chr10:5203026-5203027	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs534417015	chr10:5203057-5203058	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs561137820	chr10:5203061-5203062	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs7090038	chr10:5203081-5203082	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs181312260	chr10:5203104-5203105	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs73604006	chr10:5203156-5203157	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs191765821	chr10:5203170-5203171	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs142569391	chr10:5203218-5203219	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs562299154	chr10:5203221-5203222	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs529511008	chr10:5203225-5203226	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs369779497	chr10:5203227-5203228	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs546169300	chr10:5203234-5203235	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs183571016	chr10:5203269-5203270	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs548222708	chr10:5203270-5203271	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs149512426	chr10:5203278-5203279	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Cancer	21129771	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Renal cell carcinoma	18765545	CNVD
lymphocytic leukemia	21291569	CNVD
Urothelial cell carcinoma	18451213	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic cancer	17952125	CNVD
Rheumatoid arthritis	23223014	CNVD

Chromatin state (count:308 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5194400-5206600	Strong transcription	Liver	Liver
2	chr10:5198000-5202800	Weak transcription	Adipose Nuclei	Adipose
3	chr10:5198200-5207200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:5202800-5204000	Strong transcription	Adipose Nuclei	Adipose
5	chr10:5203200-5203400	ZNF genes & repeats	Pancreas	Pancrea
6	chr10:5204000-5204600	Weak transcription	Adipose Nuclei	Adipose
7	chr10:5206600-5208200	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:5206600-5208200	ZNF genes & repeats	Liver	Liver
9	chr10:5206600-5208200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr10:5208200-5209600	Weak transcription	Adipose Nuclei	Adipose
11	chr10:5209600-5210400	ZNF genes & repeats	Liver	Liver
12	chr10:5209600-5211400	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr10:5210400-5211400	Enhancers	HepG2	liver
14	chr10:5210400-5212800	Strong transcription	Liver	Liver
15	chr10:5210800-5211000	Active TSS	Duodenum Mucosa	Duodenum
16	chr10:5210800-5211400	Enhancers	A549	lung
17	chr10:5211000-5211200	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr10:5211000-5211400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:5211000-5211600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr10:5211200-5211400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:5211200-5211400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:5211200-5211400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
23	chr10:5211200-5211600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
24	chr10:5211200-5211600	Enhancers	Duodenum Mucosa	Duodenum
25	chr10:5211600-5212600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:5212600-5212800	Enhancers	Duodenum Mucosa	Duodenum
27	chr10:5212800-5213400	Weak transcription	Liver	Liver
28	chr10:5213400-5214000	Strong transcription	Liver	Liver
29	chr10:5214000-5222000	Weak transcription	Liver	Liver
30	chr10:5222000-5223000	Strong transcription	Liver	Liver
31	chr10:5223000-5223400	Weak transcription	Liver	Liver
32	chr10:5223400-5225800	Active TSS	Liver	Liver
33	chr10:5225600-5226400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:5225800-5226000	Enhancers	Fetal Kidney	kidney
35	chr10:5225800-5226200	Flanking Active TSS	Liver	Liver
36	chr10:5226000-5226200	Enhancers	HepG2	liver
37	chr10:5226000-5226800	Enhancers	Adipose Nuclei	Adipose
38	chr10:5226000-5226800	Weak transcription	Fetal Kidney	kidney
39	chr10:5226200-5226600	Active TSS	Liver	Liver
40	chr10:5226200-5230000	Weak transcription	HepG2	liver
41	chr10:5226400-5227000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:5226600-5226800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:5226600-5227400	Flanking Active TSS	Liver	Liver
44	chr10:5226800-5227200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:5226800-5227200	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr10:5226800-5228200	Enhancers	Fetal Kidney	kidney
47	chr10:5227000-5227600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:5227000-5227600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:5227000-5227800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:5227200-5227600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links