Variant report

Variant	esv3320896
Chromosome Location	chr10:26608039-26608525
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26608523..26610420-chr10:26610940..26613884,2	MCF-7	breast:
2	chr10:26605620..26608060-chr10:26623312..26625310,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs60153816	chr10:26608080-26608081	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs537558074	chr10:26608086-26608087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs557450736	chr10:26608089-26608090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs60579755	chr10:26608109-26608110	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs147149917	chr10:26608130-26608131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs552884382	chr10:26608168-26608169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs573127781	chr10:26608225-26608226	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs183359463	chr10:26608226-26608227	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs564563429	chr10:26608232-26608233	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs376994556	chr10:26608233-26608234	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs200885532	chr10:26608249-26608250	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs574862167	chr10:26608269-26608270	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs187700840	chr10:26608295-26608296	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs560693641	chr10:26608298-26608299	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs192547746	chr10:26608325-26608326	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs529728808	chr10:26608375-26608376	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs56850688	chr10:26608376-26608377	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs559667329	chr10:26608395-26608396	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs528801745	chr10:26608399-26608400	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs551752533	chr10:26608429-26608430	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs185142586	chr10:26608482-26608483	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs56271228	chr10:26608489-26608490	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs190072031	chr10:26608501-26608502	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26607000-26608200	Weak transcription	Pancreas	Pancrea
2	chr10:26608200-26609000	Enhancers	Pancreas	Pancrea

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