Variant report

Variant	esv3321945
Chromosome Location	chr10:42388279-42395210
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:115646794..115647295-chr10:42392648..42393148,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMS1-12	chr10:42389851-42389943	NONHSAT012847
2	lnc-BMS1-12	chr10:42391195-42391205	NONHSAT012847

Extended variants
information (count: 2136 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:2136 , 50 per page) page: 1 2 3 4 5 6 7 ... 43

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535676718	chr10:42388288-42388289	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs199534925	chr10:42388292-42388293	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs398096902	chr10:42388293-42388294	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs555503823	chr10:42388297-42388298	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs74217694	chr10:42388298-42388299	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs569241657	chr10:42388301-42388302	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs538125810	chr10:42388302-42388303	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs139556925	chr10:42388307-42388308	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs144564801	chr10:42388308-42388309	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs12412559	chr10:42388315-42388316	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs2928065	chr10:42388317-42388318	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs540221473	chr10:42388318-42388319	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs76795697	chr10:42388320-42388321	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs139465564	chr10:42388324-42388325	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs554242031	chr10:42388329-42388330	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs74326211	chr10:42388335-42388336	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs9794242	chr10:42388339-42388340	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs144978711	chr10:42388347-42388348	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs574154317	chr10:42388348-42388349	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs542878160	chr10:42388366-42388367	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs144959532	chr10:42388368-42388369	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs562651054	chr10:42388371-42388372	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs149050435	chr10:42388375-42388376	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs142107171	chr10:42388379-42388380	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs9663509	chr10:42388386-42388387	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs151308269	chr10:42388387-42388388	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs12411912	chr10:42388392-42388393	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs9702490	chr10:42388393-42388394	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs545280735	chr10:42388394-42388395	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs564994651	chr10:42388400-42388401	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs9702143	chr10:42388401-42388402	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs145899601	chr10:42388402-42388403	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs11813891	chr10:42388415-42388416	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs527286161	chr10:42388417-42388418	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs9702144	chr10:42388428-42388429	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs76307191	chr10:42388431-42388432	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs547053355	chr10:42388438-42388439	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs560668938	chr10:42388448-42388449	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs529722535	chr10:42388458-42388459	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs549191456	chr10:42388463-42388464	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs9330476	chr10:42388473-42388474	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs9702502	chr10:42388479-42388480	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs28883910	chr10:42388484-42388485	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs138706022	chr10:42388489-42388490	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs569104046	chr10:42388497-42388498	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs371289740	chr10:42388499-42388500	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs9330477	chr10:42388501-42388502	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs552059317	chr10:42388504-42388505	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs571799911	chr10:42388505-42388506	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs149384254	chr10:42388510-42388511	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:159 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42373600-42388400	ZNF genes & repeats	Spleen	Spleen
2	chr10:42373600-42388600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
3	chr10:42373600-42389400	ZNF genes & repeats	Stomach Mucosa	stomach
4	chr10:42373600-42397200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
5	chr10:42373600-42397200	ZNF genes & repeats	GM12878-XiMat	blood
6	chr10:42373600-42397200	ZNF genes & repeats	HUVEC	blood vessel
7	chr10:42373600-42397400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
8	chr10:42373600-42399600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:42373600-42399600	ZNF genes & repeats	Fetal Kidney	kidney
10	chr10:42373600-42400800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr10:42373600-42400800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:42373600-42400800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:42373600-42400800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:42373600-42400800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
17	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
18	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:42373600-42400800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
20	chr10:42373600-42400800	ZNF genes & repeats	Adipose Nuclei	Adipose
21	chr10:42373600-42400800	ZNF genes & repeats	Brain Angular Gyrus	brain
22	chr10:42373600-42400800	ZNF genes & repeats	Brain Anterior Caudate	brain
23	chr10:42373600-42400800	ZNF genes & repeats	Brain Hippocampus Middle	brain
24	chr10:42373600-42400800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
25	chr10:42373600-42400800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:42373600-42400800	ZNF genes & repeats	Brain Substantia Nigra	brain
27	chr10:42373600-42400800	ZNF genes & repeats	Colon Smooth Muscle	Colon
28	chr10:42373600-42400800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
29	chr10:42373600-42400800	ZNF genes & repeats	Fetal Heart	heart
30	chr10:42373600-42400800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
31	chr10:42373600-42400800	ZNF genes & repeats	Fetal Lung	lung
32	chr10:42373600-42400800	ZNF genes & repeats	Gastric	stomach
33	chr10:42373600-42400800	ZNF genes & repeats	Left Ventricle	heart
34	chr10:42373600-42400800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
35	chr10:42373600-42400800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
36	chr10:42373600-42400800	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
37	chr10:42373600-42400800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
38	chr10:42373600-42400800	ZNF genes & repeats	Dnd41	blood
39	chr10:42373600-42400800	ZNF genes & repeats	HMEC	breast
40	chr10:42373600-42400800	ZNF genes & repeats	HSMMtube	muscle
41	chr10:42373600-42400800	ZNF genes & repeats	NH-A	brain
42	chr10:42373600-42401200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
43	chr10:42373600-42402200	ZNF genes & repeats	Colonic Mucosa	Colon
44	chr10:42373600-42402400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
45	chr10:42373600-42402400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
46	chr10:42373600-42402400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:42373600-42402400	ZNF genes & repeats	Fetal Stomach	stomach
48	chr10:42373600-42402600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
49	chr10:42373600-42402600	ZNF genes & repeats	Liver	Liver
50	chr10:42373600-42402600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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