Variant report
Variant | esv3321961 |
---|---|
Chromosome Location | chr16:82307351-82311749 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:82304234..82306483-chr16:82306506..82308136,2 | MCF-7 | breast: | |
2 | chr16:82305728..82307988-chr16:82311473..82314764,3 | MCF-7 | breast: | |
3 | chr16:82305728..82307988-chr16:82311473..82314764,3 | MCF-7 | breast: | |
4 | chr16:82305562..82308291-chr16:82312214..82314112,2 | K562 | blood: |
No data |
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs549783838 | chr16:82307404-82307405 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs35300300 | chr16:82307406-82307407 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs147764356 | chr16:82307440-82307441 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs565008691 | chr16:82307448-82307449 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs532101192 | chr16:82307485-82307486 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs13332629 | chr16:82307536-82307537 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs34464482 | chr16:82307542-82307543 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs191681624 | chr16:82307565-82307566 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs184188443 | chr16:82307592-82307593 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs187386667 | chr16:82307616-82307617 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs528617272 | chr16:82307621-82307622 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs374690296 | chr16:82307629-82307630 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs537876953 | chr16:82307639-82307640 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs114989002 | chr16:82307653-82307654 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs192886751 | chr16:82307655-82307656 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs535342958 | chr16:82307691-82307692 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs141156312 | chr16:82307692-82307693 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs548353181 | chr16:82307693-82307694 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs78722698 | chr16:82307694-82307695 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs185479746 | chr16:82307724-82307725 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs542816852 | chr16:82307744-82307745 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs561197468 | chr16:82307751-82307752 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs145645434 | chr16:82307762-82307763 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs543486798 | chr16:82307764-82307765 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs536837209 | chr16:82307768-82307769 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs564726377 | chr16:82307784-82307785 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs190305636 | chr16:82307790-82307791 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs182542745 | chr16:82307819-82307820 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs145429262 | chr16:82307832-82307833 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs527899328 | chr16:82307843-82307844 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs549142652 | chr16:82307865-82307866 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs149190629 | chr16:82307899-82307900 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs531874658 | chr16:82307900-82307901 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs553573397 | chr16:82307918-82307919 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs1826242 | chr16:82307919-82307920 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs183514585 | chr16:82307925-82307926 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs575098896 | chr16:82307944-82307945 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs188251317 | chr16:82307991-82307992 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs116000188 | chr16:82307998-82307999 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs536486742 | chr16:82308021-82308022 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs181046589 | chr16:82308023-82308024 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs112050562 | chr16:82308044-82308045 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs558773654 | chr16:82308085-82308086 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs143317061 | chr16:82308125-82308126 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs151302378 | chr16:82308144-82308145 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs559210290 | chr16:82308150-82308151 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs537048042 | chr16:82308156-82308157 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs565418266 | chr16:82308164-82308165 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs575591397 | chr16:82308206-82308207 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs542854125 | chr16:82308207-82308208 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Autism | 19415332 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Schizophrenia | 22958593 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Autism | 22495311 | CNVD |
Wilms tumour | 21544195 | CNVD |
Prostate cancer | 18632612 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Breast cancer | 17850661 | CNVD |
Breast cancer | 16702952 | CNVD |
Medulloblastoma | 16968546 | CNVD |
Prostate cancer | 19242612 | CNVD |
Cancer | 22429812 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Ewing''s sarcoma | 22429812 | CNVD |
Melanoma | 18172304 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 20837533 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Multiple myeloma | 21628407 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Breast cancer | 17001317 | CNVD |
Breast cancer | 17133270 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Breast cancer | 17603634 | CNVD |
Prostate cancer | 16573809 | CNVD |
Prostate cancer | 17245344 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Breast cancer | 21806811 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Prostate cancer | 21965145 | CNVD |
Cancer | 21183584 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Lung cancer | 18438408 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Breast cancer | 21509527 | CNVD |
Breast cancer | 21364760 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Autism | 21865298 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Cancer | 20164920 | CNVD |
Chronic lymphocytic leukemia | 22228453 | CNVD |
Breast cancer | 22522925 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Prostate cancer | 16461572 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:82307400-82307600 | Enhancers | Left Ventricle | heart |
2 | chr16:82307600-82308600 | Weak transcription | Left Ventricle | heart |
3 | chr16:82308400-82308800 | Enhancers | Right Ventricle | heart |
4 | chr16:82308600-82309200 | Enhancers | Left Ventricle | heart |
5 | chr16:82309200-82309400 | Weak transcription | Left Ventricle | heart |