Variant report

Variant	esv3322021
Chromosome Location	chr4:55858820-55861368
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55860793..55864701-chr4:55868151..55871442,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs537271346	chr4:55858882-55858883	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs557599270	chr4:55858892-55858893	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs574237572	chr4:55858940-55858941	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs149373760	chr4:55859060-55859061	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs367621084	chr4:55859071-55859072	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs571001837	chr4:55859113-55859114	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs13125964	chr4:55859151-55859152	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs202244724	chr4:55859152-55859153	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs545077640	chr4:55859161-55859162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs73234287	chr4:55859184-55859185	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs530695582	chr4:55859207-55859208	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs74466745	chr4:55859242-55859243	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs113630882	chr4:55859283-55859284	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs186808434	chr4:55859314-55859315	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs372451460	chr4:55859356-55859357	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs575505927	chr4:55859374-55859375	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs62306404	chr4:55859398-55859399	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs144714223	chr4:55859413-55859414	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs138133914	chr4:55859428-55859429	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs191714134	chr4:55859447-55859448	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs561125918	chr4:55859459-55859460	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs565896682	chr4:55859473-55859474	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs207464712	chr4:55859481-55859482	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs551436291	chr4:55859493-55859494	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs571668189	chr4:55859495-55859496	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs28460101	chr4:55859515-55859516	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs62306405	chr4:55859530-55859531	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs567895947	chr4:55859551-55859552	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs4356964	chr4:55859552-55859553	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs553705467	chr4:55859588-55859589	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs540130663	chr4:55859590-55859591	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	22183965	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	21922591	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Parkinson disease	21956041	CNVD
Mental retardation	20522426	CNVD
delayed speech	20522426	CNVD
growth disorder	20522426	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Parkinson disease	18923514	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Breast cancer	16272173	CNVD
Glioblastoma multiforme	19435819	CNVD
Multiple myeloma	16616336	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Ovarian neoplasms	16753589	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioblastoma multiforme	21569311	CNVD
Glioblastoma	17504929	CNVD
Glioblastoma	16823502	CNVD
Melanoma	16908931	CNVD
Glioblastoma	20031968	CNVD
Medulloblastoma	19270706	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Olfactory neuroblastoma	18408657	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Rhabdomyosarcoma	16790082	CNVD
Gastrointestinal stromal cancer	17438095	CNVD
Colorectal cancer	16272173	CNVD
Lung cancer	19208797	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	19115005	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	21138945	CNVD
Cancer	20164920	CNVD
Cancer	22183965	CNVD
Autism	22543975	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55858000-55859600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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