Variant report

Variant	esv3323017
Chromosome Location	chr10:42356392-42356550
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:47 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs373293276	chr10:42356395-42356396	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs112702622	chr10:42356399-42356400	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs61794743	chr10:42356402-42356403	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs375763152	chr10:42356409-42356410	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs200430896	chr10:42356410-42356411	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs112214534	chr10:42356412-42356413	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199799376	chr10:42356421-42356422	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs200454810	chr10:42356435-42356436	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs201109667	chr10:42356436-42356437	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs74217366	chr10:42356438-42356439	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs78206205	chr10:42356448-42356449	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs74219289	chr10:42356454-42356455	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs79846553	chr10:42356455-42356456	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs111303460	chr10:42356456-42356457	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs36145470	chr10:42356460-42356461	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs201369872	chr10:42356465-42356466	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs74985651	chr10:42356474-42356475	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs79353983	chr10:42356480-42356481	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs71613514	chr10:42356484-42356485	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs80110580	chr10:42356485-42356486	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs76203985	chr10:42356486-42356487	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs75678238	chr10:42356489-42356490	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs202072099	chr10:42356490-42356491	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs202104818	chr10:42356495-42356496	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs79973472	chr10:42356496-42356497	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs75263546	chr10:42356498-42356499	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs78036492	chr10:42356500-42356501	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs75875453	chr10:42356505-42356506	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs77871713	chr10:42356506-42356507	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs79580522	chr10:42356508-42356509	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs75571413	chr10:42356509-42356510	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs12780681	chr10:42356511-42356512	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs71193037	chr10:42356512-42356513	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs76066890	chr10:42356513-42356514	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs75372833	chr10:42356517-42356518	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs376464146	chr10:42356523-42356524	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs200359755	chr10:42356525-42356526	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs12777917	chr10:42356527-42356528	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs79013495	chr10:42356529-42356530	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs79933512	chr10:42356530-42356531	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs75113497	chr10:42356531-42356532	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs78105227	chr10:42356533-42356534	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs80132243	chr10:42356535-42356536	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs200876181	chr10:42356537-42356538	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs75368712	chr10:42356538-42356539	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs9663161	chr10:42356543-42356544	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs76953602	chr10:42356544-42356545	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42354800-42366400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:42354800-42367200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr10:42354800-42367200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr10:42354800-42367200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
5	chr10:42354800-42367400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr10:42354800-42367400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr10:42354800-42367400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr10:42354800-42367400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr10:42354800-42368000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:42354800-42368000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr10:42355000-42356400	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
12	chr10:42355000-42356400	ZNF genes & repeats	NHDF-Ad	bronchial
13	chr10:42355000-42356400	ZNF genes & repeats	NHEK	skin
14	chr10:42355000-42356800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
15	chr10:42355000-42357800	ZNF genes & repeats	Gastric	stomach
16	chr10:42355000-42358800	ZNF genes & repeats	Fetal Brain Female	brain
17	chr10:42355000-42359200	ZNF genes & repeats	Brain Germinal Matrix	brain
18	chr10:42355000-42360400	ZNF genes & repeats	NHLF	lung
19	chr10:42355000-42362800	ZNF genes & repeats	Psoas Muscle	Psoas
20	chr10:42355000-42365400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
21	chr10:42355000-42365400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:42355000-42365400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
23	chr10:42355000-42365600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
24	chr10:42355000-42365600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
25	chr10:42355000-42365600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:42355000-42365600	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr10:42355000-42365600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
28	chr10:42355000-42365600	ZNF genes & repeats	Aorta	Aorta
29	chr10:42355000-42365600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr10:42355000-42365600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
31	chr10:42355000-42365600	ZNF genes & repeats	Stomach Mucosa	stomach
32	chr10:42355000-42365600	ZNF genes & repeats	GM12878-XiMat	blood
33	chr10:42355000-42365600	ZNF genes & repeats	HepG2	liver
34	chr10:42355000-42365600	ZNF genes & repeats	HSMMtube	muscle
35	chr10:42355000-42365600	ZNF genes & repeats	HUVEC	blood vessel
36	chr10:42355000-42365800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr10:42355000-42365800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
38	chr10:42355000-42365800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:42355000-42365800	ZNF genes & repeats	Fetal Heart	heart
40	chr10:42355000-42365800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
41	chr10:42355000-42365800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
42	chr10:42355000-42365800	ZNF genes & repeats	K562	blood
43	chr10:42355000-42365800	ZNF genes & repeats	NH-A	brain
44	chr10:42355000-42366000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:42355000-42366000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:42355000-42366000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
48	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
50	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links