Variant report

Variant	esv3323415
Chromosome Location	chr6:77634633-77639031
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:77630606..77632984-chr6:77637427..77639871,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-15	chr6:77638732-77638769	NONHSAT113650

Extended variants
information (count: 79 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:79 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564998987	chr6:77634635-77634636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs532357018	chr6:77634644-77634645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs544464956	chr6:77634667-77634668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs562663030	chr6:77634695-77634696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs148391476	chr6:77634731-77634732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs529849022	chr6:77634752-77634753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs547954352	chr6:77634759-77634760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs77750201	chr6:77634837-77634838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs139458249	chr6:77634841-77634842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs564391956	chr6:77634855-77634856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs10455325	chr6:77634881-77634882	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs368171072	chr6:77634882-77634883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs563086952	chr6:77634889-77634890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs6935014	chr6:77634897-77634898	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs569821029	chr6:77634899-77634900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs530428216	chr6:77634901-77634902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs550806200	chr6:77634902-77634903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs569095830	chr6:77634917-77634918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs536783350	chr6:77634932-77634933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs10455105	chr6:77634940-77634941	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs573207318	chr6:77634957-77634958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs566743204	chr6:77634973-77634974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs533900523	chr6:77635000-77635001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs75252442	chr6:77635014-77635015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs78778895	chr6:77635021-77635022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs544501789	chr6:77635036-77635037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs181646705	chr6:77635066-77635067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs186875003	chr6:77635087-77635088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs75003787	chr6:77635120-77635121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs192029322	chr6:77635154-77635155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs533618766	chr6:77635156-77635157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs534756762	chr6:77635172-77635173	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs114133845	chr6:77635192-77635193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs199681022	chr6:77635248-77635249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs532703963	chr6:77635262-77635263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs6453950	chr6:77635301-77635302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs569130920	chr6:77635315-77635316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs551885945	chr6:77635351-77635352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs138642132	chr6:77635353-77635354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs578132851	chr6:77635356-77635357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs182242499	chr6:77635368-77635369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs370704139	chr6:77635384-77635385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs6453951	chr6:77635390-77635391	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs534289534	chr6:77635499-77635500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs559027599	chr6:77635513-77635514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs577287653	chr6:77635533-77635534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs538159923	chr6:77635563-77635564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs185983341	chr6:77635608-77635609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs189651341	chr6:77635649-77635650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs182276438	chr6:77635669-77635670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77634600-77636200	Weak transcription	Aorta	Aorta
2	chr6:77636200-77636400	ZNF genes & repeats	Aorta	Aorta

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