Variant report

Variant	esv3324950
Chromosome Location	chr9:115867204-115869311
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFP37-2	chr9:115867003-115872433	NONHSAT134034
2	lnc-ZFP37-2	chr9:115867003-115872433	ENSG00000225684
3	lnc-ZFP37-2	chr9:115865618-115872433	ENSG00000225684

Extended variants
information (count: 35 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs576373173	chr9:115867246-115867247	Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
2	rs551842873	chr9:115867271-115867272	Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs2009977	chr9:115867276-115867277	Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs184819272	chr9:115867279-115867280	Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs372531448	chr9:115867298-115867299	Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs540811066	chr9:115867336-115867337	Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
7	rs564184918	chr9:115867359-115867360	Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
8	rs533382316	chr9:115867367-115867368	Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
9	rs77994698	chr9:115867400-115867401	Weak transcription Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
10	rs73656476	chr9:115867407-115867408	Weak transcription Genic enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs373696651	chr9:115867436-115867437	Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
12	rs529495023	chr9:115867445-115867446	Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs189328812	chr9:115867453-115867454	Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs144873424	chr9:115867539-115867540	Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
15	rs148643023	chr9:115867542-115867543	Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs373312643	chr9:115867548-115867549	Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs551613700	chr9:115867566-115867567	Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs571689184	chr9:115867573-115867574	Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs539274325	chr9:115867598-115867599	Weak transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs556286331	chr9:115867601-115867602	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs569970661	chr9:115867610-115867611	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs535796645	chr9:115867613-115867614	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs555691553	chr9:115867614-115867615	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs572106926	chr9:115867633-115867634	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs540992531	chr9:115867673-115867674	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs557582316	chr9:115867693-115867694	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs569453663	chr9:115867707-115867708	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs10981632	chr9:115867814-115867815	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs370971420	chr9:115867815-115867816	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs529434290	chr9:115867871-115867872	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs542946186	chr9:115867887-115867888	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs559594154	chr9:115867911-115867912	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs199691755	chr9:115867950-115867951	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs200740989	chr9:115868654-115868655	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs372666712	chr9:115868940-115868941	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Testicular germ cell tumor	18059402	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD
Lung cancer	19147751	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16272173	CNVD
Bladder cancer	21909424	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115861600-115874000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:115867000-115867400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:115867000-115867600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:115867400-115874000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:115867600-115874000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links