Variant report

Variant	esv3325171
Chromosome Location	chr7:58024410-58029608
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 551 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:551 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191635327	chr7:58024418-58024419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs527861118	chr7:58024423-58024424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs545933765	chr7:58024424-58024425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs140368786	chr7:58024429-58024430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs202191225	chr7:58024439-58024440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs531363264	chr7:58024441-58024442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs549508649	chr7:58024453-58024454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs568385615	chr7:58024460-58024461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs200478336	chr7:58024475-58024476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs547640124	chr7:58024490-58024491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs565551723	chr7:58024537-58024538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs201754122	chr7:58024544-58024545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs539230640	chr7:58024595-58024596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs558653468	chr7:58024607-58024608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs570608922	chr7:58024615-58024616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs538276816	chr7:58024618-58024619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs556290869	chr7:58024621-58024622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs184179698	chr7:58024628-58024629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs542181995	chr7:58024638-58024639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs554471404	chr7:58024650-58024651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs199569725	chr7:58024653-58024654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112858649	chr7:58024654-58024655	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs190029326	chr7:58024659-58024660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs190080926	chr7:58024672-58024673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs531299400	chr7:58024689-58024690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs543457464	chr7:58024690-58024691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs180824559	chr7:58024691-58024692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs549065414	chr7:58024711-58024712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs528844560	chr7:58024713-58024714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs184612723	chr7:58024722-58024723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs190295446	chr7:58024727-58024728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs181954817	chr7:58024730-58024731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs199711252	chr7:58024733-58024734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs200678964	chr7:58024773-58024774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs551151588	chr7:58024780-58024781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs201057923	chr7:58024781-58024782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs537958626	chr7:58024782-58024783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs147766997	chr7:58024792-58024793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs199615938	chr7:58024793-58024794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs578208474	chr7:58024843-58024844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs554536605	chr7:58024845-58024846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs200809369	chr7:58024857-58024858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs185736367	chr7:58024871-58024872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs111572320	chr7:58024889-58024890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs202076469	chr7:58024901-58024902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs540825655	chr7:58024913-58024914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs188976550	chr7:58024914-58024915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs375354354	chr7:58024922-58024923	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs576550368	chr7:58024935-58024936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs543165951	chr7:58024937-58024938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Wilms tumour	21544195	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
head and neck squamous cell carcinoma	17671120	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:58021800-58026400	Weak transcription	Liver	Liver
2	chr7:58022400-58026400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:58025400-58026400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:58026400-58027800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr7:58026400-58028000	ZNF genes & repeats	Liver	Liver
6	chr7:58026400-58036600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr7:58026400-58042800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr7:58026400-58043000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:58027200-58027600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell

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