Variant report
| Variant | esv3325579 |
|---|---|
| Chromosome Location | chr11:25679687-25680152 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs534752536 | chr11:25679696-25679697 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs553118732 | chr11:25679735-25679736 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs574576183 | chr11:25679757-25679758 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs72875199 | chr11:25679776-25679777 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 5 | rs1389407 | chr11:25679785-25679786 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs77729668 | chr11:25679788-25679789 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs182758550 | chr11:25679807-25679808 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs564178347 | chr11:25679810-25679811 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs564364424 | chr11:25679870-25679871 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs528548623 | chr11:25679896-25679897 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs540400087 | chr11:25679906-25679907 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs146267532 | chr11:25679909-25679910 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs375245316 | chr11:25679990-25679991 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs188870742 | chr11:25680005-25680006 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs2349230 | chr11:25680015-25680016 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 16 | rs61885917 | chr11:25680080-25680081 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs375563652 | chr11:25680083-25680084 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs565291740 | chr11:25680125-25680126 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:56)
| Disease | PMID | Source |
|---|---|---|
| Burkitt''s lymphoma | 19759907 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Melanoma | 18172304 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Parathyroid adenoma | 22454399 | CNVD |
| Chordoma | 21602918 | CNVD |
| Breast cancer | 21949216 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 19222835 | CNVD |
| T-cell acute lymphoblastic leukemia | 20065082 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Beckwith-Wiedemann syndrome | 21518781 | CNVD |
| Wilms tumour | 21518781 | CNVD |
| Hepatoblastoma | 21518781 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Gastrointestinal stromal cancer | 17535989 | CNVD |
| Paraganglioma | 17535989 | CNVD |
| Pulmonary chondroma | 17535989 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Autism | 22495311 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Multiple myeloma | 16461302 | CNVD |
| Non-small cell lung cancer | 21385341 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Breast cancer | 21785460 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Medulloblastoma | 16783165 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Congenital diaphragmatic hernia | 21525063 | CNVD |
| Renal cell carcinoma | 18194544 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Potocki-Shaffer syndrome | 19222835 | CNVD |
| WAGR syndrome | 19222835 | CNVD |
| Chordoma | 18071362 | CNVD |
| Autism | 22102821 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Breast cancer | 21364760 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| Bipolar disorder | 19114987 | CNVD |
| Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
| Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
| early-passage human iPS cells | 21368824 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:25678000-25685800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
