Variant report

Variant	esv3325581
Chromosome Location	chr6:61901284-61904713
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 520 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:520 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs572120549	chr6:61901287-61901288	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs200782921	chr6:61901294-61901295	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs568063470	chr6:61901304-61901305	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs555715370	chr6:61901311-61901312	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs4314534	chr6:61901312-61901313	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs544641139	chr6:61901317-61901318	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199869639	chr6:61901318-61901319	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs373800443	chr6:61901334-61901335	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs557188842	chr6:61901347-61901348	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs368782456	chr6:61901349-61901350	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs372379046	chr6:61901350-61901351	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs377269805	chr6:61901353-61901354	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs368194064	chr6:61901356-61901357	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs372431880	chr6:61901370-61901371	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs376725967	chr6:61901371-61901372	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs369436268	chr6:61901372-61901373	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs373050856	chr6:61901373-61901374	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs560615518	chr6:61901376-61901377	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs375059819	chr6:61901382-61901383	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs370030843	chr6:61901386-61901387	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs373346658	chr6:61901387-61901388	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs541313945	chr6:61901391-61901392	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs376467480	chr6:61901393-61901394	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs370606015	chr6:61901396-61901397	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs373267412	chr6:61901399-61901400	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs377159553	chr6:61901401-61901402	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs370600057	chr6:61901402-61901403	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs112843336	chr6:61901404-61901405	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs113702215	chr6:61901405-61901406	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs112329682	chr6:61901406-61901407	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs539598786	chr6:61901407-61901408	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs374229603	chr6:61901412-61901413	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs367608748	chr6:61901413-61901414	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs370344144	chr6:61901417-61901418	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs375924390	chr6:61901419-61901420	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs35796279	chr6:61901429-61901430	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs377171834	chr6:61901439-61901440	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs193110951	chr6:61901446-61901447	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs531802357	chr6:61901465-61901466	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs62413498	chr6:61901470-61901471	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs62413499	chr6:61901478-61901479	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs62413500	chr6:61901487-61901488	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs550319815	chr6:61901489-61901490	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs62413501	chr6:61901493-61901494	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs62413502	chr6:61901520-61901521	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs565406084	chr6:61901556-61901557	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs532533199	chr6:61901561-61901562	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs547809334	chr6:61901562-61901563	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs184186033	chr6:61901563-61901564	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs11962710	chr6:61901618-61901619	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Lung cancer	19547694	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:61893800-61905800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr6:61894000-61901800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:61894800-61901800	Weak transcription	K562	blood
4	chr6:61896400-61902400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr6:61900200-61902800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr6:61900600-61902400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr6:61900600-61905400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr6:61901000-61901800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:61901000-61901800	Weak transcription	Brain Angular Gyrus	brain
10	chr6:61901400-61902400	ZNF genes & repeats	Primary T cells from cord blood	blood
11	chr6:61901600-61902400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:61901600-61902600	ZNF genes & repeats	HepG2	liver
13	chr6:61901800-61902000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
14	chr6:61901800-61902000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
15	chr6:61901800-61902000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:61901800-61902000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
17	chr6:61901800-61902000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
18	chr6:61901800-61902000	ZNF genes & repeats	Brain Hippocampus Middle	brain
19	chr6:61901800-61902000	ZNF genes & repeats	Fetal Lung	lung
20	chr6:61901800-61902000	ZNF genes & repeats	A549	lung
21	chr6:61901800-61902000	ZNF genes & repeats	HSMMtube	muscle
22	chr6:61901800-61902000	ZNF genes & repeats	NHDF-Ad	bronchial
23	chr6:61901800-61902200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:61901800-61902200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:61901800-61902200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
26	chr6:61901800-61902200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:61901800-61902200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
28	chr6:61901800-61902200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:61901800-61902200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:61901800-61902200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
31	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
33	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
35	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:61901800-61902200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
37	chr6:61901800-61902200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:61901800-61902200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
39	chr6:61901800-61902200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:61901800-61902200	ZNF genes & repeats	Brain Angular Gyrus	brain
41	chr6:61901800-61902200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
42	chr6:61901800-61902200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:61901800-61902200	ZNF genes & repeats	Brain Substantia Nigra	brain
44	chr6:61901800-61902200	ZNF genes & repeats	Colonic Mucosa	Colon
45	chr6:61901800-61902200	ZNF genes & repeats	Colon Smooth Muscle	Colon
46	chr6:61901800-61902200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
47	chr6:61901800-61902200	ZNF genes & repeats	Fetal Brain Male	brain
48	chr6:61901800-61902200	ZNF genes & repeats	Fetal Heart	heart
49	chr6:61901800-61902200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
50	chr6:61901800-61902200	ZNF genes & repeats	Left Ventricle	heart

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