Variant report

Variant	esv3325964
Chromosome Location	chr6:75501281-75535378
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 272 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:272 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs577098861	chr6:75510000-75510001	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs181687162	chr6:75510020-75510021	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs184796744	chr6:75510022-75510023	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs2095664	chr6:75510029-75510030	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs377055268	chr6:75510222-75510223	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs76655090	chr6:75510250-75510251	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs149542184	chr6:75510270-75510271	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs35859902	chr6:75510291-75510292	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs111389108	chr6:75510297-75510298	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs538953491	chr6:75510305-75510306	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs555754305	chr6:75510351-75510352	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs199761607	chr6:75510384-75510385	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs143988085	chr6:75510417-75510418	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs189528370	chr6:75510430-75510431	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs140513226	chr6:75510434-75510435	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs112076719	chr6:75510444-75510445	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs371046848	chr6:75510505-75510506	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs180706134	chr6:75510563-75510564	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs185327776	chr6:75510581-75510582	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs541119795	chr6:75510594-75510595	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs191221715	chr6:75510633-75510634	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs371992643	chr6:75510699-75510700	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs74825474	chr6:75510709-75510710	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs577780549	chr6:75510722-75510723	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs545326996	chr6:75510778-75510779	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs368201000	chr6:75510851-75510852	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs563615708	chr6:75510870-75510871	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs75227099	chr6:75510927-75510928	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs181249533	chr6:75511012-75511013	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs143096134	chr6:75511041-75511042	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs542204266	chr6:75511077-75511078	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs34179553	chr6:75511082-75511083	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs528189937	chr6:75511089-75511090	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs186716231	chr6:75511115-75511116	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs76955686	chr6:75511160-75511161	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs532327308	chr6:75511177-75511178	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs191502442	chr6:75511182-75511183	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs139846588	chr6:75511190-75511191	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs536511144	chr6:75511208-75511209	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs555735139	chr6:75511250-75511251	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs367766902	chr6:75511259-75511260	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs567523945	chr6:75511311-75511312	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs535134803	chr6:75511361-75511362	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs545369056	chr6:75511437-75511438	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs149134878	chr6:75511491-75511492	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs182928493	chr6:75511523-75511524	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs577842533	chr6:75511524-75511525	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs562763663	chr6:75511552-75511553	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs142830459	chr6:75511565-75511566	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs557269211	chr6:75511604-75511605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ovarian cancer	17437010	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Multiple myeloma	16616336	CNVD
Acute myeloid leukemia	16864856	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Myelodysplastic syndrome	18508791	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75510000-75511600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:75511600-75514000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:75515400-75515800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:75515800-75516000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:75515800-75516200	Active TSS	Ovary	ovary
6	chr6:75515800-75516400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:75516000-75516200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:75516000-75516400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:75516000-75516600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:75516000-75516600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:75516200-75516400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:75516200-75516600	Enhancers	Ovary	ovary
13	chr6:75516400-75516600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:75516600-75517600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:75517600-75517800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:75521400-75521800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:75524400-75524600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links