Variant report

Variant	esv3327371
Chromosome Location	chr11:106579217-106581790
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 187 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:187 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200176077	chr11:106579259-106579260	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs139808232	chr11:106579264-106579265	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs201162728	chr11:106579268-106579269	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs141579529	chr11:106579282-106579283	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs560510431	chr11:106579303-106579304	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs144365377	chr11:106579348-106579349	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs368161113	chr11:106579359-106579360	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs201241195	chr11:106579366-106579367	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs148799635	chr11:106579390-106579391	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs369808744	chr11:106579409-106579410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs554701687	chr11:106579410-106579411	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs374550010	chr11:106579417-106579418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs199916103	chr11:106579433-106579434	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs550353436	chr11:106579447-106579448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs565337235	chr11:106579463-106579464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs532906157	chr11:106579483-106579484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs551047724	chr11:106579484-106579485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs80246825	chr11:106579491-106579492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs545429668	chr11:106579574-106579575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs527310332	chr11:106579580-106579581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs548533803	chr11:106579628-106579629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs567558747	chr11:106579663-106579664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs1532041	chr11:106579685-106579686	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs535291741	chr11:106579688-106579689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539168421	chr11:106579741-106579742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs192333301	chr11:106579748-106579749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs77933667	chr11:106579770-106579771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs7949698	chr11:106579781-106579782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs183319899	chr11:106579829-106579830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs554620875	chr11:106579836-106579837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs576721951	chr11:106579844-106579845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs543753268	chr11:106579880-106579881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs563756709	chr11:106579897-106579898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs565510941	chr11:106579918-106579919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs532547425	chr11:106579931-106579932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs113438450	chr11:106579941-106579942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs202173018	chr11:106579991-106579992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs10631780	chr11:106579992-106579993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs71041683	chr11:106579995-106579996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs12294063	chr11:106579996-106579997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs12273881	chr11:106579999-106580000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs1599945	chr11:106580004-106580005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs71488224	chr11:106580011-106580012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs541197440	chr11:106580017-106580018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs12294068	chr11:106580019-106580020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs12800534	chr11:106580031-106580032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs12800542	chr11:106580039-106580040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs548963342	chr11:106580040-106580041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs12294075	chr11:106580043-106580044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs377252020	chr11:106580057-106580058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106552800-106628200	Weak transcription	Pancreas	Pancrea
2	chr11:106554800-106585000	Weak transcription	Fetal Lung	lung
3	chr11:106577600-106585200	Weak transcription	NH-A	brain
4	chr11:106579000-106579400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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