Variant report

Variant	esv3328057
Chromosome Location	chr10:19657196-19659344
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:95 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575454661	chr10:19657196-19657197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs542881407	chr10:19657234-19657235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs143680088	chr10:19657235-19657236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs11009638	chr10:19657242-19657243	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs540405799	chr10:19657283-19657284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs559932051	chr10:19657355-19657356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs147205877	chr10:19657371-19657372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs187247405	chr10:19657379-19657380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs191676663	chr10:19657404-19657405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs531125873	chr10:19657473-19657474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs117731323	chr10:19657481-19657482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs56918638	chr10:19657491-19657492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs373025931	chr10:19657535-19657536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs183580951	chr10:19657582-19657583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs73593882	chr10:19657655-19657656	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs552951454	chr10:19657667-19657668	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs139625632	chr10:19657680-19657681	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs76945405	chr10:19657694-19657695	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs538303975	chr10:19657708-19657709	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs371420308	chr10:19657750-19657751	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs368205292	chr10:19657762-19657763	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs35474463	chr10:19657801-19657802	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs148157457	chr10:19657818-19657819	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs12259274	chr10:19657820-19657821	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs201527941	chr10:19657824-19657825	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs575140553	chr10:19657835-19657836	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs71387066	chr10:19657837-19657838	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs370227130	chr10:19657846-19657847	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs5002419	chr10:19657850-19657851	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs554875281	chr10:19657905-19657906	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs375444114	chr10:19657943-19657944	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs187301718	chr10:19657955-19657956	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs540472435	chr10:19657964-19657965	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs5783670	chr10:19658072-19658073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs35378523	chr10:19658073-19658074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs386370865	chr10:19658077-19658078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs71387067	chr10:19658081-19658082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs565030987	chr10:19658086-19658087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs564955446	chr10:19658108-19658109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs5783671	chr10:19658109-19658110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs112936840	chr10:19658129-19658130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs371790825	chr10:19658157-19658158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs545490691	chr10:19658194-19658195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs191747490	chr10:19658206-19658207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs28410844	chr10:19658217-19658218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs541391026	chr10:19658236-19658237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs182474554	chr10:19658310-19658311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs35235481	chr10:19658331-19658332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs138327598	chr10:19658332-19658333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs549106446	chr10:19658372-19658373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19639800-19661600	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19642600-19657600	Weak transcription	Fetal Intestine Large	intestine
3	chr10:19657600-19658000	ZNF genes & repeats	Fetal Intestine Large	intestine
4	chr10:19658000-19674000	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links