Variant report

Variant	esv3328479
Chromosome Location	chr6:58198643-58201141
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:124 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575648580	chr6:58198683-58198684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs539560623	chr6:58198687-58198688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs368498102	chr6:58198690-58198691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs12209019	chr6:58198699-58198700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs577011735	chr6:58198701-58198702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs540907891	chr6:58198705-58198706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs569608175	chr6:58198725-58198726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs186018496	chr6:58198734-58198735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs574410327	chr6:58198757-58198758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs541398450	chr6:58198764-58198765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs62414303	chr6:58198776-58198777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs563145440	chr6:58198785-58198786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs530617323	chr6:58198816-58198817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs552030301	chr6:58198829-58198830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs564677478	chr6:58198861-58198862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs528712941	chr6:58198885-58198886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs188255179	chr6:58198888-58198889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs538137618	chr6:58198899-58198900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs372935160	chr6:58198909-58198910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs62414320	chr6:58198935-58198936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs142958594	chr6:58198965-58198966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs568740080	chr6:58198999-58199000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs536160130	chr6:58199000-58199001	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs550954144	chr6:58199040-58199041	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs569197656	chr6:58199098-58199099	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs539919824	chr6:58199104-58199105	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs558000915	chr6:58199124-58199125	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs570612307	chr6:58199139-58199140	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs534478285	chr6:58199149-58199150	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs10573124	chr6:58199156-58199157	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs552773020	chr6:58199167-58199168	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs2472947	chr6:58199188-58199189	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs7740149	chr6:58199219-58199220	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs377542389	chr6:58199226-58199227	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs200662357	chr6:58199233-58199234	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs9391439	chr6:58199238-58199239	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs560757426	chr6:58199242-58199243	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs2472948	chr6:58199260-58199261	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs559510553	chr6:58199274-58199275	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs556909977	chr6:58199277-58199278	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs575156499	chr6:58199289-58199290	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs2472949	chr6:58199294-58199295	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs563991075	chr6:58199323-58199324	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs528216050	chr6:58199339-58199340	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs149990011	chr6:58199368-58199369	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs181787346	chr6:58199406-58199407	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs529603560	chr6:58199431-58199432	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs551038604	chr6:58199435-58199436	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs569213086	chr6:58199436-58199437	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs533208919	chr6:58199445-58199446	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Neuroblastoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myelofibrosis	22110671	CNVD
small cell lung cancer	20016488	CNVD
Ovarian cancer	21720365	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:58198400-58201000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:58199000-58200000	ZNF genes & repeats	Fetal Lung	lung
3	chr6:58199200-58199800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr6:58199200-58199800	ZNF genes & repeats	Dnd41	blood
5	chr6:58199400-58200000	ZNF genes & repeats	Fetal Heart	heart
6	chr6:58199800-58200000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links