Variant report
| Variant | esv3330201 |
|---|---|
| Chromosome Location | chr10:18410351-18410737 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs199769814 | chr10:18410419-18410420 | Weak transcription Bivalent Enhancer | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs199744069 | chr10:18410426-18410427 | Weak transcription Bivalent Enhancer | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs536569139 | chr10:18410498-18410499 | Weak transcription Bivalent Enhancer | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs111165458 | chr10:18410501-18410502 | Weak transcription Bivalent Enhancer | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs576160622 | chr10:18410521-18410522 | Weak transcription Bivalent Enhancer | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs200732298 | chr10:18410532-18410533 | Weak transcription Bivalent Enhancer | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs576758741 | chr10:18410537-18410538 | Weak transcription Bivalent Enhancer | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs386370832 | chr10:18410538-18410539 | Weak transcription Bivalent Enhancer | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs146910110 | chr10:18410541-18410542 | Weak transcription Bivalent Enhancer | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs369421751 | chr10:18410543-18410544 | Weak transcription Bivalent Enhancer | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs10828255 | chr10:18410572-18410573 | Weak transcription Bivalent Enhancer | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 12 | rs10828257 | chr10:18410612-18410613 | Weak transcription Flanking Bivalent TSS/Enh | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 13 | rs547932517 | chr10:18410648-18410649 | Weak transcription Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs558730179 | chr10:18410654-18410655 | Weak transcription Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs576847973 | chr10:18410655-18410656 | Weak transcription Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs143508363 | chr10:18410684-18410685 | Weak transcription Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs112839020 | chr10:18410690-18410691 | Weak transcription Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs369963638 | chr10:18410700-18410701 | Weak transcription Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs543899065 | chr10:18410729-18410730 | Weak transcription Flanking Bivalent TSS/Enh | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:39)
| Disease | PMID | Source |
|---|---|---|
| Medulloblastoma | 16783165 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Colorectal cancer | 19287155 | CNVD |
| Cutaneous T-cell lymphoma | 21881587 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Cancer | 20164919 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Epilepsy | 22083797 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:18409800-18412600 | Weak transcription | Fetal Heart | heart |
| 2 | chr10:18410400-18410600 | Bivalent Enhancer | Fetal Kidney | kidney |
| 3 | chr10:18410600-18410800 | Flanking Bivalent TSS/Enh | Fetal Kidney | kidney |
