Variant report

Variant	esv3331405
Chromosome Location	chr20:29825032-29826014
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 135 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:135 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs35293804	chr20:29825057-29825058	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs545323713	chr20:29825059-29825060	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs565478247	chr20:29825062-29825063	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs151147370	chr20:29825084-29825085	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs551066920	chr20:29825085-29825086	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs201443271	chr20:29825095-29825096	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs145194358	chr20:29825100-29825101	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs530143129	chr20:29825101-29825102	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs75590578	chr20:29825108-29825109	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs79377203	chr20:29825113-29825114	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs368201782	chr20:29825116-29825117	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs546903238	chr20:29825117-29825118	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs201605588	chr20:29825132-29825133	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs538835778	chr20:29825133-29825134	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs113375054	chr20:29825158-29825159	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs558424180	chr20:29825161-29825162	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs370344143	chr20:29825192-29825193	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs374911292	chr20:29825205-29825206	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs186121016	chr20:29825213-29825214	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs149364777	chr20:29825224-29825225	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs142287374	chr20:29825228-29825229	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs569043740	chr20:29825232-29825233	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs112218679	chr20:29825243-29825244	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs537510163	chr20:29825246-29825247	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs112135465	chr20:29825251-29825252	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs199952787	chr20:29825263-29825264	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs554672969	chr20:29825267-29825268	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs574073906	chr20:29825270-29825271	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs7266932	chr20:29825289-29825290	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs553247826	chr20:29825299-29825300	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs200859886	chr20:29825302-29825303	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs113568015	chr20:29825303-29825304	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs573153880	chr20:29825314-29825315	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs545693688	chr20:29825318-29825319	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs75133222	chr20:29825331-29825332	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs79716205	chr20:29825333-29825334	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs77293120	chr20:29825362-29825363	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs556053726	chr20:29825370-29825371	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs553788016	chr20:29825374-29825375	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs565300109	chr20:29825376-29825377	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs531153888	chr20:29825387-29825388	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs375181650	chr20:29825406-29825407	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs544355150	chr20:29825417-29825418	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs561401257	chr20:29825434-29825435	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs76392358	chr20:29825443-29825444	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs564588791	chr20:29825456-29825457	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs56291027	chr20:29825468-29825469	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs78600079	chr20:29825473-29825474	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs62207791	chr20:29825474-29825475	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs74880442	chr20:29825476-29825477	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21806811	CNVD
Melanoma	21693616	CNVD
Astrocytoma	17387387	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
colon cancer	17210682	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	22028636	CNVD
Breast cancer	21264507	CNVD
Thyroid cancer	19087340	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Soft tissue tumor	16732325	CNVD
Colorectal cancer	19359472	CNVD
Gastric cancer	17167181	CNVD
Myeloproliferative neoplasm	19047681	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Bladder cancer	21909424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	22860045	CNVD
Ovarian cancer	20844748	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	17603634	CNVD
Melanoma	18172304	CNVD
Breast cancer	16608533	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
early-passage human iPS cells	21368824	CNVD
Lung cancer	18438408	CNVD
Gastric cancer	16891809	CNVD
Prostate cancer	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Oral cancer	21386901	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Gastric cancer	22014070	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:29803800-29833200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr20:29803800-29833200	ZNF genes & repeats	Primary T cells from cord blood	blood
3	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
4	chr20:29803800-29833200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
5	chr20:29803800-29833200	ZNF genes & repeats	Brain Hippocampus Middle	brain
6	chr20:29803800-29833200	ZNF genes & repeats	Fetal Kidney	kidney
7	chr20:29803800-29833200	ZNF genes & repeats	Fetal Lung	lung
8	chr20:29803800-29833200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
9	chr20:29803800-29833400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr20:29803800-29833400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr20:29803800-29833400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:29803800-29833400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
13	chr20:29803800-29833400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
14	chr20:29803800-29833400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr20:29803800-29833400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr20:29803800-29833400	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr20:29803800-29833400	ZNF genes & repeats	Liver	Liver
18	chr20:29803800-29833400	ZNF genes & repeats	Brain Substantia Nigra	brain
19	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
20	chr20:29803800-29833400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr20:29803800-29833400	ZNF genes & repeats	Gastric	stomach
22	chr20:29803800-29833400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
23	chr20:29803800-29833400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
24	chr20:29803800-29833400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
25	chr20:29803800-29833600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
26	chr20:29803800-29833600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
27	chr20:29803800-29833800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr20:29804000-29833200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
29	chr20:29804000-29833200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
30	chr20:29804000-29833200	ZNF genes & repeats	Dnd41	blood
31	chr20:29804000-29833400	ZNF genes & repeats	Brain Anterior Caudate	brain
32	chr20:29804000-29833400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
33	chr20:29804000-29833400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
34	chr20:29804000-29833400	ZNF genes & repeats	Fetal Brain Male	brain
35	chr20:29804000-29833400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
36	chr20:29804000-29833600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
37	chr20:29804200-29833400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
38	chr20:29804400-29833000	ZNF genes & repeats	HepG2	liver
39	chr20:29804400-29833200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr20:29804400-29833400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
41	chr20:29804600-29829800	ZNF genes & repeats	Primary B cells from cord blood	blood
42	chr20:29808400-29833200	ZNF genes & repeats	K562	blood
43	chr20:29811800-29833200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
44	chr20:29811800-29833200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
45	chr20:29812000-29826000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr20:29812000-29833200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
47	chr20:29812000-29833200	ZNF genes & repeats	HUVEC	blood vessel
48	chr20:29812000-29833400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr20:29813000-29833200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
50	chr20:29813400-29833000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell

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